We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TSPAN3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • TSPAN3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:257.2 nTPM
HPA:257.2 nTPM
GTEx:300.5 nTPM
FANTOM5:242.8 Scaled Tags Per Million
Pig:113.6 nTPM
Mouse:382.8 nTPM
Allen mouse:29.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 257.2
Sample id Sample description nTPM
Amygdala
nTPM: 257.2
2514 Male, age 75, right hemisphere 275.0
2695 Female, age 67, right hemisphere 260.1
1987 Female, age 91, left hemisphere 256.6
2814 Male, age 76, right hemisphere 253.5
2517 Female, age 94, left hemisphere 240.8
Basal amygdala
nTPM: 235.7
2609 Male, age 75, right hemisphere 277.5
2243 Female, age 91, right hemisphere 242.0
1955 Male, age 76, both hemispheres 241.1
2110 Male, age 80, left hemisphere 236.2
2685 Female, age 94, left hemisphere 225.6
2827 Female, age 67, right hemisphere 191.5
Central amygdala
nTPM: 243.2
2515 Male, age 75, right hemisphere 275.1
1905 Male, age 76, both hemispheres 242.2
2239 Male, age 80, left hemisphere 234.8
2701 Female, age 91, right hemisphere 233.8
2826 Female, age 94, left hemisphere 230.3
Corticomedial amygdala
nTPM: 244.7
2428 Male, age 75, right hemisphere 284.3
2829 Male, age 80, left hemisphere 256.2
2242 Female, age 91, right hemisphere 249.5
2240 Male, age 76, both hemispheres 242.6
2429 Female, age 94, left hemisphere 237.6
2535 Female, age 67, right hemisphere 198.0
Lateral amygdala
nTPM: 231.4
2516 Male, age 75, right hemisphere 269.9
1883 Male, age 76, both hemispheres 243.2
2256 Male, age 80, left hemisphere 229.8
2534 Female, age 94, left hemisphere 225.3
2255 Female, age 91, right hemisphere 221.5
2830 Female, age 67, right hemisphere 198.6
Stria terminalis, bed nucleus
nTPM: 229.3
1974 Female, age 91, both hemispheres 238.5
2486 Female, age 94, both hemispheres 225.7
2201 Male, age 74, unknown 223.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 300.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 300.5
Samples: 152

Max nTPM: 554.4
Min nTPM: 105.8
Std nTPM: 77.4
Median nTPM: 300.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 554.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 526.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 488.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 471.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 467.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 467.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 463.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 441.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 440.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 435.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 422.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 420.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 414.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 411.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 406.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 401.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 400.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 385.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 371.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 371.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 370.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 370.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 368.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 365.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 364.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 364.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 363.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 361.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 359.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 358.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 357.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 353.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 352.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 352.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 351.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 346.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 345.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 345.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 341.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 340.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 339.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 338.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 336.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 335.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 335.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 334.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 333.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 332.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 329.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 328.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 327.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 324.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 322.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 322.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 319.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 319.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 318.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 318.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 317.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 316.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 314.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 314.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 314.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 313.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 313.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 311.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 310.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 308.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 307.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 305.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 305.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 305.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 302.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 302.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 301.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 301.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 299.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 298.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 297.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 297.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 296.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 293.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 290.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 290.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 289.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 287.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 287.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 287.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 287.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 286.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 285.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 282.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 281.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 280.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 273.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 273.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 272.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 270.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 268.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 267.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 266.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 264.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 262.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 262.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 260.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 256.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 253.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 251.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 250.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 247.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 247.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 247.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 245.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 244.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 242.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 241.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 239.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 239.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 238.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 238.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 236.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 235.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 235.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 233.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 232.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 231.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 228.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 226.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 226.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 222.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 222.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 218.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 213.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 211.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 210.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 209.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 208.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 206.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 204.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 200.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 200.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 199.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 199.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 195.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 182.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 179.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 172.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 163.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 161.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 141.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 131.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 105.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 242.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 242.8
FF:10151-102I7 76 years, female 242.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 113.6
Pig sample Sample description nTPM
Amygdala
nTPM: 113.6
Samples: 4

Max nTPM: 149.2
Min nTPM: 97.5
Sample A Female 149.2
Sample B Female 105.4
Sample C Male 97.5
Sample D Male 102.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 382.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 382.8
Samples: 4

Max nTPM: 391.6
Min nTPM: 375.2
Sample A Male 391.6
Sample B Male 375.2
Sample C Female 383.6
Sample D Female 380.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 29.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 29.1
71489783 Antisense, RP_050512_04_E11, Mouse strain C57BL/6J (56 days, male) 29.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.