MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA:18.1 nTPM
GTEx:24.7 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:12.8 nTPM
Mouse:9.5 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.3
2828 Female, age 72, unknown 18.7
2411 Female, age 72, unknown 18.6
1827 Male, age 72, unknown 18.2
2019 Male, age 18, unknown 17.7
2666 Male, age 74, left hemisphere 17.4
1833 Male, age 53, unknown 17.3
2586 Male, age 75, left hemisphere 17.1
1830 Male, age 51, unknown 17.0
1870 Female, age 42, unknown 16.4
2219 Male, age 76, both hemispheres 15.0
Dorsal raphe nucleus
nTPM: 16.3
2750 Male, age 76, both hemispheres 17.6
2298 Female, age 72, unknown 16.9
2047 Male, age 72, unknown 16.5
1828 Male, age 53, unknown 16.1
2016 Female, age 72, unknown 14.7
Inferior colliculus
nTPM: 16.5
2097 Female, age 72, unknown 17.0
2849 Male, age 72, unknown 16.5
1848 Female, age 42, unknown 16.4
1890 Male, age 53, unknown 16.1
Median raphe nucleus
nTPM: 16.4
2220 Male, age 76, midline 16.4
Pedunculopontine tegmental nucleus
nTPM: 17.3
2338 Male, age 61, both hemispheres 19.0
1921 Female, age 85, both hemispheres 16.5
2334 Male, age 80, both hemispheres 16.4
Periaquaductal grey, anterior
nTPM: 17.9
1947 Male, age 18, unknown 19.7
1795 Male, age 51, unknown 17.3
2502 Female, age 75, unknown 16.8
Periaquaductal grey, dorsal
nTPM: 15.9
2464 Female, age 72, unknown 17.0
1831 Male, age 72, unknown 16.7
2850 Male, age 76, both hemispheres 15.3
1840 Male, age 53, unknown 14.7
Periaquaductal grey, lateral
nTPM: 17.6
2053 Male, age 18, unknown 18.6
2140 Male, age 76, both hemispheres 17.4
2272 Male, age 74, both hemispheres 17.0
Pretectal area
nTPM: 18.1
2316 Male, age 76, right hemisphere 19.3
2667 Female, age 75, unknown 19.3
1944 Female, age 72, unknown 19.1
1816 Male, age 51, unknown 19.0
2007 Male, age 72, unknown 18.4
2407 Male, age 75, both hemispheres 18.4
1817 Female, age 42, unknown 17.7
1815 Male, age 53, unknown 17.5
2224 Female, age 72, unknown 17.0
2825 Male, age 18, unknown 16.8
2273 Male, age 74, both hemispheres 16.3
Red nucleus
nTPM: 17.9
1904 Male, age 53, unknown 19.6
2588 Male, age 74, left hemisphere 19.0
2769 Male, age 72, unknown 18.9
2584 Male, age 75, left hemisphere 18.8
2823 Male, age 76, right hemisphere 18.5
2227 Male, age 72, unknown 18.3
2785 Male, age 18, unknown 17.8
2725 Female, age 75, unknown 17.4
1865 Male, age 51, unknown 17.3
2503 Female, age 72, unknown 16.7
1821 Female, age 72, unknown 16.3
1954 Female, age 42, unknown 16.3
Substantia nigra
nTPM: 17.0
2409 Female, age 72, unknown 19.0
2590 Female, age 75, unknown 18.5
1941 Male, age 53, unknown 18.0
2583 Male, age 75, right hemisphere 17.9
1889 Female, age 72, unknown 17.8
2665 Male, age 74, both hemispheres 17.4
1851 Male, age 51, unknown 17.0
1916 Female, age 42, unknown 16.9
2699 Male, age 18, unknown 14.6
2241 Male, age 72, unknown 13.3
Superior colliculus
nTPM: 17.8
2087 Female, age 72, unknown 19.1
1913 Female, age 42, unknown 18.8
2261 Male, age 18, unknown 18.8
1995 Male, age 72, unknown 18.4
1796 Male, age 53, unknown 18.2
2587 Male, age 74, left hemisphere 17.9
1839 Male, age 51, unknown 17.5
2668 Female, age 75, unknown 16.5
1895 Male, age 76, right hemisphere 16.4
2664 Male, age 75, both hemispheres 15.9
Ventral tegmental area
nTPM: 16.3
1942 Male, age 51, unknown 17.0
2410 Female, age 72, unknown 17.0
2223 Female, age 72, unknown 16.6
1915 Female, age 42, unknown 16.1
2021 Male, age 53, unknown 15.9
2218 Male, age 76, both hemispheres 15.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.7
Samples: 139

Max nTPM: 43.1
Min nTPM: 15.0
Std nTPM: 5.5
Median nTPM: 23.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 43.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 41.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 39.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 39.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 38.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 36.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 35.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 33.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 33.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.8
Pig sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 7.7
Sample C Male 11.9
Sample D Male 11.7
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 9.6
Min nTPM: 7.1
Sample B Female 7.1
Sample C Male 9.6
Sample D Male 8.1
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 10.6
Sample C Male 10.1
Sample D Male 8.7
Superior colliculi
nTPM: 12.8
Samples: 4

Max nTPM: 19.3
Min nTPM: 10.0
Sample A Female 11.2
Sample B Female 19.3
Sample C Male 10.8
Sample D Male 10.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 12.3
Min nTPM: 7.8
Sample A Male 12.3
Sample B Male 8.0
Sample C Female 7.8
Sample D Female 9.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
77620493 Antisense, RP_070129_03_E11, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.