MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:69.5 nTPM
HPA:69.5 nTPM
GTEx:55.6 nTPM
FANTOM5:168.6 Scaled Tags Per Million
Pig:54.3 nTPM
Mouse:340.5 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.3
2019 Male, age 18, unknown 80.4
2411 Female, age 72, unknown 69.6
1827 Male, age 72, unknown 63.1
2219 Male, age 76, both hemispheres 61.3
1833 Male, age 53, unknown 60.1
2828 Female, age 72, unknown 58.1
1830 Male, age 51, unknown 57.7
1870 Female, age 42, unknown 55.8
2666 Male, age 74, left hemisphere 50.9
2586 Male, age 75, left hemisphere 46.1
Dorsal raphe nucleus
nTPM: 59.8
1828 Male, age 53, unknown 66.6
2298 Female, age 72, unknown 63.0
2750 Male, age 76, both hemispheres 59.1
2047 Male, age 72, unknown 56.5
2016 Female, age 72, unknown 53.7
Inferior colliculus
nTPM: 62.9
2097 Female, age 72, unknown 68.2
1848 Female, age 42, unknown 64.9
1890 Male, age 53, unknown 61.5
2849 Male, age 72, unknown 57.2
Median raphe nucleus
nTPM: 55.6
2220 Male, age 76, midline 55.6
Pedunculopontine tegmental nucleus
nTPM: 62.8
1921 Female, age 85, both hemispheres 66.8
2334 Male, age 80, both hemispheres 62.4
2338 Male, age 61, both hemispheres 59.3
Periaquaductal grey, anterior
nTPM: 56.1
1947 Male, age 18, unknown 58.3
1795 Male, age 51, unknown 57.1
2502 Female, age 75, unknown 52.8
Periaquaductal grey, dorsal
nTPM: 54.8
2464 Female, age 72, unknown 58.0
2850 Male, age 76, both hemispheres 55.7
1840 Male, age 53, unknown 54.2
1831 Male, age 72, unknown 51.3
Periaquaductal grey, lateral
nTPM: 56.5
2272 Male, age 74, both hemispheres 67.7
2053 Male, age 18, unknown 52.4
2140 Male, age 76, both hemispheres 49.4
Pretectal area
nTPM: 68.3
2007 Male, age 72, unknown 81.9
1817 Female, age 42, unknown 79.7
1816 Male, age 51, unknown 79.0
2667 Female, age 75, unknown 77.2
1944 Female, age 72, unknown 74.0
1815 Male, age 53, unknown 70.7
2273 Male, age 74, both hemispheres 65.1
2224 Female, age 72, unknown 60.7
2316 Male, age 76, right hemisphere 59.8
2407 Male, age 75, both hemispheres 54.2
2825 Male, age 18, unknown 48.7
Red nucleus
nTPM: 62.5
1821 Female, age 72, unknown 70.7
2785 Male, age 18, unknown 69.8
2823 Male, age 76, right hemisphere 66.6
2503 Female, age 72, unknown 65.4
2725 Female, age 75, unknown 64.0
1904 Male, age 53, unknown 61.6
2227 Male, age 72, unknown 60.2
1865 Male, age 51, unknown 59.5
1954 Female, age 42, unknown 59.4
2769 Male, age 72, unknown 59.4
2588 Male, age 74, left hemisphere 59.1
2584 Male, age 75, left hemisphere 53.7
Substantia nigra
nTPM: 69.5
1916 Female, age 42, unknown 79.6
2241 Male, age 72, unknown 79.2
1889 Female, age 72, unknown 78.5
2409 Female, age 72, unknown 72.3
1851 Male, age 51, unknown 71.7
1941 Male, age 53, unknown 68.0
2590 Female, age 75, unknown 63.4
2699 Male, age 18, unknown 61.6
2665 Male, age 74, both hemispheres 61.4
2583 Male, age 75, right hemisphere 58.9
Superior colliculus
nTPM: 60.1
2087 Female, age 72, unknown 71.7
1895 Male, age 76, right hemisphere 70.1
2587 Male, age 74, left hemisphere 64.3
2261 Male, age 18, unknown 62.8
1796 Male, age 53, unknown 62.3
2668 Female, age 75, unknown 58.5
1839 Male, age 51, unknown 56.8
1995 Male, age 72, unknown 54.3
1913 Female, age 42, unknown 53.3
2664 Male, age 75, both hemispheres 46.7
Ventral tegmental area
nTPM: 61.0
2410 Female, age 72, unknown 72.8
2218 Male, age 76, both hemispheres 67.3
1915 Female, age 42, unknown 64.9
1942 Male, age 51, unknown 55.4
2223 Female, age 72, unknown 53.7
2021 Male, age 53, unknown 51.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.6
Samples: 139

Max nTPM: 106.8
Min nTPM: 28.9
Std nTPM: 14.5
Median nTPM: 53.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 106.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 105.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 104.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 84.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 83.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 81.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 77.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 77.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 76.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 76.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 76.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.6
FF:10158-103A5 76 years, female 168.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.3
Pig sample Sample description nTPM
Midbrain
nTPM: 48.1
Samples: 4

Max nTPM: 61.3
Min nTPM: 39.3
Sample A Female 39.3
Sample B Female 44.4
Sample C Male 61.3
Sample D Male 47.3
Periaqueductal gray
nTPM: 37.2
Samples: 3

Max nTPM: 40.3
Min nTPM: 32.5
Sample B Female 40.3
Sample C Male 38.9
Sample D Male 32.5
Substantia nigra
nTPM: 43.5
Samples: 4

Max nTPM: 54.2
Min nTPM: 33.8
Sample A Female 54.2
Sample B Female 38.3
Sample C Male 47.5
Sample D Male 33.8
Superior colliculi
nTPM: 54.3
Samples: 4

Max nTPM: 69.1
Min nTPM: 45.8
Sample A Female 56.2
Sample B Female 45.8
Sample C Male 69.1
Sample D Male 46.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 340.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 340.5
Samples: 4

Max nTPM: 346.3
Min nTPM: 327.7
Sample A Male 344.2
Sample B Male 346.3
Sample C Female 327.7
Sample D Female 343.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
655502 Antisense, RP_040922_01_C03, Mouse strain C57BL/6J (56 days, male) 13.6
72723 Antisense, RP_040407_01_A05, Mouse strain C57BL/6J (56 days, male) 11.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.