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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:58.9 nTPM
HPA:58.9 nTPM
GTEx:115.5 nTPM
FANTOM5:21.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 58.9
Sample id Sample description nTPM
Amygdala
nTPM: 57.9
2695 Female, age 67, right hemisphere 62.2
2814 Male, age 76, right hemisphere 57.9
1987 Female, age 91, left hemisphere 57.5
2514 Male, age 75, right hemisphere 57.3
2517 Female, age 94, left hemisphere 54.7
Basal amygdala
nTPM: 55.4
2609 Male, age 75, right hemisphere 58.4
2827 Female, age 67, right hemisphere 56.3
2685 Female, age 94, left hemisphere 55.6
2110 Male, age 80, left hemisphere 55.4
1955 Male, age 76, both hemispheres 54.0
2243 Female, age 91, right hemisphere 52.7
Central amygdala
nTPM: 58.9
2826 Female, age 94, left hemisphere 63.9
2515 Male, age 75, right hemisphere 59.2
1905 Male, age 76, both hemispheres 58.4
2239 Male, age 80, left hemisphere 56.8
2701 Female, age 91, right hemisphere 55.9
Corticomedial amygdala
nTPM: 54.9
2428 Male, age 75, right hemisphere 60.2
2829 Male, age 80, left hemisphere 55.4
2240 Male, age 76, both hemispheres 55.0
2242 Female, age 91, right hemisphere 54.0
2429 Female, age 94, left hemisphere 52.6
2535 Female, age 67, right hemisphere 52.2
Lateral amygdala
nTPM: 57.4
2516 Male, age 75, right hemisphere 62.3
2830 Female, age 67, right hemisphere 61.4
2534 Female, age 94, left hemisphere 57.6
1883 Male, age 76, both hemispheres 55.6
2256 Male, age 80, left hemisphere 55.1
2255 Female, age 91, right hemisphere 52.2
Stria terminalis, bed nucleus
nTPM: 51.9
2201 Male, age 74, unknown 54.8
1974 Female, age 91, both hemispheres 51.6
2486 Female, age 94, both hemispheres 49.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 115.5
Samples: 152

Max nTPM: 355.4
Min nTPM: 7.8
Std nTPM: 52.1
Median nTPM: 103.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 355.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 349.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 273.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 257.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 228.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 223.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 221.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 205.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 198.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 196.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 190.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 187.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 184.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 183.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 183.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 181.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 180.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 179.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 167.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 166.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 165.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 163.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 163.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 160.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 160.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 160.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 159.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 159.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 158.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 153.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 150.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 149.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 145.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 144.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 143.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 143.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 140.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 139.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 134.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 132.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 132.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 131.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 130.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 130.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 129.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 129.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 126.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 126.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 125.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 124.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 124.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 121.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 120.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 120.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 120.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 120.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 119.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 118.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 117.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 117.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 116.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 115.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 114.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 113.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 113.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 112.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 111.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 110.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 108.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 108.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 107.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 107.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 106.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 105.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 104.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 103.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 102.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 100.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 100.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 99.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 99.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 99.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 99.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 98.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 97.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 96.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 95.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 95.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 94.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 94.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 93.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 92.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 92.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 91.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 91.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 91.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 89.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 87.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 87.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 86.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 86.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 85.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 84.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 82.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 81.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 81.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 81.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 80.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 78.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 78.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 78.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 77.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 76.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 76.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 76.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 76.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 76.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 75.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 75.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 74.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 73.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 73.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 72.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 72.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 71.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 70.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 69.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 69.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 69.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 68.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 67.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 66.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 65.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 65.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 63.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 62.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 62.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 62.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 61.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 60.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 59.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 57.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 48.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 46.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 40.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 7.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 21.0
FF:10151-102I7 76 years, female 21.0

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