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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:61.7 nTPM
HPA:61.7 nTPM
GTEx:122.3 nTPM
FANTOM5:28.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 61.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 58.1
2048 Male, age 55, midline 61.9
1981 Female, age 72, midline 59.8
2194 Female, age 79, both hemispheres 58.6
2816 Male, age 47, midline 55.6
2565 Male, age 75, midline 54.5
Cervical spinal cord, dorsal horn
nTPM: 57.5
2173 Female, age 72, unknown 63.3
2296 Male, age 66, both hemispheres 60.0
2069 Male, age 47, both hemispheres 58.4
1877 Male, age 55, unknown 56.8
2297 Male, age 75, both hemispheres 53.4
2721 Male, age 90, both hemispheres 52.8
Cervical spinal cord, ventral horn
nTPM: 61.7
2480 Male, age 75, both hemispheres 71.2
2295 Male, age 66, both hemispheres 65.6
2809 Male, age 90, both hemispheres 63.8
2820 Female, age 79, both hemispheres 57.9
2068 Male, age 55, unknown 57.0
2098 Female, age 72, unknown 54.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 122.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 122.3
Samples: 159

Max nTPM: 313.7
Min nTPM: 43.7
Std nTPM: 46.0
Median nTPM: 118.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 313.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 284.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 271.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 244.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 234.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 231.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 227.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 217.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 202.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 200.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 193.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 191.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 187.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 187.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 185.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 182.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 175.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 174.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 172.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 166.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 166.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 164.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 164.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 162.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 161.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 161.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 159.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 159.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 157.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 157.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 156.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 156.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 155.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 152.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 150.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 147.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 146.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 144.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 143.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 143.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 141.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 141.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 140.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 140.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 138.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 136.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 136.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 134.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 133.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 133.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 132.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 132.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 132.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 130.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 129.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 128.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 127.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 126.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 126.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 125.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 125.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 124.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 123.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 123.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 123.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 123.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 122.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 121.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 121.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 121.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 120.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 119.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 119.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 118.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 118.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 118.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 118.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 118.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 118.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 117.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 117.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 116.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 115.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 114.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 114.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 112.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 112.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 111.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 111.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 111.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 111.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 110.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 110.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 108.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 107.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 104.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 104.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 104.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 102.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 102.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 100.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 100.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 99.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 99.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 98.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 98.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 97.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 96.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 95.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 95.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 95.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 95.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 95.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 95.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 94.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 93.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 92.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 92.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 92.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 92.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 91.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 91.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 90.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 90.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 89.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 87.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 86.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 83.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 81.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 81.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 80.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 79.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 79.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 79.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 78.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 77.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 75.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 73.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 73.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 72.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 71.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 69.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 68.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 67.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 67.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 67.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 66.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 65.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 64.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 63.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 60.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 59.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 58.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 57.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 54.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 52.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 50.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 43.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 28.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 28.9
FF:10181-103D1 60 years, female 32.9
FF:10159-103A6 76 years, female 24.8

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