MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:66.0 nTPM
HPA:66.0 nTPM
GTEx:140.1 nTPM
FANTOM5:30.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.5
1870 Female, age 42, unknown 62.8
2666 Male, age 74, left hemisphere 62.8
1833 Male, age 53, unknown 62.7
1830 Male, age 51, unknown 62.4
2586 Male, age 75, left hemisphere 61.4
2411 Female, age 72, unknown 60.3
2019 Male, age 18, unknown 59.0
2828 Female, age 72, unknown 58.9
1827 Male, age 72, unknown 58.0
2219 Male, age 76, both hemispheres 56.8
Dorsal raphe nucleus
nTPM: 59.8
2750 Male, age 76, both hemispheres 62.3
2047 Male, age 72, unknown 60.2
2016 Female, age 72, unknown 60.1
1828 Male, age 53, unknown 58.8
2298 Female, age 72, unknown 57.6
Inferior colliculus
nTPM: 57.8
1890 Male, age 53, unknown 58.9
1848 Female, age 42, unknown 58.8
2097 Female, age 72, unknown 57.0
2849 Male, age 72, unknown 56.5
Median raphe nucleus
nTPM: 58.0
2220 Male, age 76, midline 58.0
Pedunculopontine tegmental nucleus
nTPM: 59.4
2334 Male, age 80, both hemispheres 62.0
2338 Male, age 61, both hemispheres 58.5
1921 Female, age 85, both hemispheres 57.7
Periaquaductal grey, anterior
nTPM: 57.3
2502 Female, age 75, unknown 60.0
1947 Male, age 18, unknown 56.3
1795 Male, age 51, unknown 55.4
Periaquaductal grey, dorsal
nTPM: 57.7
2464 Female, age 72, unknown 59.3
1840 Male, age 53, unknown 57.6
2850 Male, age 76, both hemispheres 57.5
1831 Male, age 72, unknown 56.5
Periaquaductal grey, lateral
nTPM: 56.6
2053 Male, age 18, unknown 59.8
2140 Male, age 76, both hemispheres 55.4
2272 Male, age 74, both hemispheres 54.5
Pretectal area
nTPM: 57.9
1817 Female, age 42, unknown 62.6
1815 Male, age 53, unknown 62.3
2316 Male, age 76, right hemisphere 59.5
2224 Female, age 72, unknown 57.4
2825 Male, age 18, unknown 57.4
2667 Female, age 75, unknown 57.0
2007 Male, age 72, unknown 56.8
1816 Male, age 51, unknown 56.5
2407 Male, age 75, both hemispheres 55.9
1944 Female, age 72, unknown 55.8
2273 Male, age 74, both hemispheres 55.4
Red nucleus
nTPM: 66.0
2503 Female, age 72, unknown 71.8
1821 Female, age 72, unknown 71.0
1904 Male, age 53, unknown 68.3
2227 Male, age 72, unknown 68.2
1954 Female, age 42, unknown 68.0
1865 Male, age 51, unknown 67.9
2769 Male, age 72, unknown 65.4
2823 Male, age 76, right hemisphere 65.1
2588 Male, age 74, left hemisphere 64.3
2725 Female, age 75, unknown 62.5
2785 Male, age 18, unknown 61.6
2584 Male, age 75, left hemisphere 57.4
Substantia nigra
nTPM: 58.7
2699 Male, age 18, unknown 62.7
2241 Male, age 72, unknown 61.5
1889 Female, age 72, unknown 60.3
2583 Male, age 75, right hemisphere 60.0
2665 Male, age 74, both hemispheres 58.9
1851 Male, age 51, unknown 58.1
1916 Female, age 42, unknown 57.6
2590 Female, age 75, unknown 57.6
1941 Male, age 53, unknown 55.5
2409 Female, age 72, unknown 54.5
Superior colliculus
nTPM: 59.6
1895 Male, age 76, right hemisphere 61.9
1913 Female, age 42, unknown 61.5
2668 Female, age 75, unknown 61.0
1995 Male, age 72, unknown 60.8
1839 Male, age 51, unknown 60.2
2087 Female, age 72, unknown 59.6
2587 Male, age 74, left hemisphere 58.8
2261 Male, age 18, unknown 58.2
2664 Male, age 75, both hemispheres 58.2
1796 Male, age 53, unknown 56.1
Ventral tegmental area
nTPM: 59.4
2223 Female, age 72, unknown 61.9
2410 Female, age 72, unknown 59.7
1915 Female, age 42, unknown 59.1
1942 Male, age 51, unknown 59.1
2218 Male, age 76, both hemispheres 58.5
2021 Male, age 53, unknown 57.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 140.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 140.1
Samples: 139

Max nTPM: 360.8
Min nTPM: 49.5
Std nTPM: 60.1
Median nTPM: 127.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 360.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 336.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 315.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 307.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 281.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 275.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 264.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 260.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 259.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 244.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 241.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.1
FF:10158-103A5 76 years, female 30.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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