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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:108.4 nTPM
HPA:108.4 nTPM
GTEx:91.9 nTPM
FANTOM5:270.7 Scaled Tags Per Million
Pig:104.6 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 108.4
Sample id Sample description nTPM
Amygdala
nTPM: 108.4
2814 Male, age 76, right hemisphere 119.5
2695 Female, age 67, right hemisphere 112.0
2514 Male, age 75, right hemisphere 108.1
1987 Female, age 91, left hemisphere 104.1
2517 Female, age 94, left hemisphere 98.2
Basal amygdala
nTPM: 96.8
2609 Male, age 75, right hemisphere 106.5
1955 Male, age 76, both hemispheres 105.0
2110 Male, age 80, left hemisphere 99.1
2243 Female, age 91, right hemisphere 93.6
2685 Female, age 94, left hemisphere 92.7
2827 Female, age 67, right hemisphere 83.8
Central amygdala
nTPM: 104.6
1905 Male, age 76, both hemispheres 113.4
2515 Male, age 75, right hemisphere 113.0
2239 Male, age 80, left hemisphere 100.6
2701 Female, age 91, right hemisphere 98.8
2826 Female, age 94, left hemisphere 97.0
Corticomedial amygdala
nTPM: 98.8
2428 Male, age 75, right hemisphere 110.3
2240 Male, age 76, both hemispheres 106.0
2429 Female, age 94, left hemisphere 97.8
2829 Male, age 80, left hemisphere 97.3
2242 Female, age 91, right hemisphere 94.7
2535 Female, age 67, right hemisphere 86.6
Lateral amygdala
nTPM: 99.2
1883 Male, age 76, both hemispheres 115.0
2516 Male, age 75, right hemisphere 109.3
2534 Female, age 94, left hemisphere 99.2
2255 Female, age 91, right hemisphere 94.2
2256 Male, age 80, left hemisphere 93.2
2830 Female, age 67, right hemisphere 84.3
Stria terminalis, bed nucleus
nTPM: 100.2
1974 Female, age 91, both hemispheres 101.9
2486 Female, age 94, both hemispheres 99.5
2201 Male, age 74, unknown 99.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 91.9
Samples: 152

Max nTPM: 190.8
Min nTPM: 56.3
Std nTPM: 19.9
Median nTPM: 90.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 190.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 165.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 146.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 142.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 140.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 137.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 133.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 132.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 123.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 122.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 121.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 120.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 118.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 114.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 110.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 110.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 109.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 109.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 107.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 106.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 106.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 106.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 106.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 105.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 105.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 105.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 105.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 105.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 105.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 104.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 104.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 103.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 103.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 103.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 103.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 103.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 102.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 102.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 101.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 100.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 100.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 100.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 99.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 99.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 99.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 99.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 99.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 98.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 98.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 97.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 97.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 96.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 96.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 95.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 95.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 94.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 94.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 93.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 93.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 93.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 93.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 93.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 92.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 92.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 92.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 92.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 92.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 92.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 91.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 91.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 91.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 91.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 91.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 91.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 91.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 91.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 90.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 90.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 90.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 89.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 89.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 89.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 89.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 89.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 88.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 88.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 87.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 87.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 86.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 86.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 85.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 85.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 85.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 85.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 85.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 85.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 84.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 84.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 84.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 84.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 83.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 83.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 83.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 83.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 83.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 83.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 82.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 82.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 81.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 79.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 79.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 78.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 77.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 77.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 77.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 76.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 76.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 75.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 74.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 74.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 74.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 74.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 73.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 73.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 73.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 73.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 73.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 71.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 70.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 69.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 68.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 67.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 67.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 67.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 67.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 67.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 67.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 66.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 66.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 65.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 65.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 65.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 65.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 64.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 63.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 63.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 62.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 60.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 56.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 270.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 270.7
FF:10151-102I7 76 years, female 270.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 104.6
Pig sample Sample description nTPM
Amygdala
nTPM: 104.6
Samples: 4

Max nTPM: 143.3
Min nTPM: 83.1
Sample A Female 143.3
Sample B Female 96.4
Sample C Male 95.6
Sample D Male 83.1

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