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RPS2
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  • TISSUE

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  • RPS2
PATHOLOGY OVARIAN CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
ANTIBODIES
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Dictionary
Ovarian cancer
Human pathology
Ovarian cancer
OVARIAN CANCER - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

Read more
RPS2 is not prognostic in ovarian cancer


Stage:
Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

Read more
: 776.44
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

Read more
: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average FPKM 973.5
Number of samples 373
Samples
Sample Description FPKM
TCGA-25-2393-01A 81 years, female, white, dead, 1157 days 4662.1
TCGA-04-1542-01A 52 years, female, white, dead, 2561 days 3810.1
TCGA-24-0966-01A 78 years, female, black or african american, alive, 232 days 3017.0
TCGA-30-1853-01A 58 years, female, white, dead, 1103 days 2776.0
TCGA-13-0762-01A 65 years, female, white, alive, 3400 days 2576.7
TCGA-09-1659-01B 51 years, female, white, dead, 304 days 2444.2
TCGA-23-1021-01B 45 years, female, white, dead, 1446 days 2422.8
TCGA-10-0931-01A 44 years, female, white, dead, 1000 days 2359.7
TCGA-04-1347-01A 81 years, female, white, alive, 1919 days 2292.8
TCGA-10-0927-01A 65 years, female, dead, 2490 days 2245.7
TCGA-13-1409-01A 73 years, female, white, dead, 1742 days 2184.8
TCGA-61-2092-01A 57 years, female, white, alive, 1573 days 2153.9
TCGA-13-0804-01A 74 years, female, white, dead, 1073 days 2147.3
TCGA-09-0364-01A 80 years, female, white, dead, 887 days 2066.9
TCGA-29-1703-01A 56 years, female, black or african american, dead, 1815 days 2010.2
TCGA-25-2396-01A 71 years, female, white, dead, 92 days 2009.2
TCGA-23-1022-01A 67 years, female, white, dead, 1511 days 1999.9
TCGA-23-1027-01A 48 years, female, white, dead, 976 days 1994.7
TCGA-61-2002-01A 46 years, female, white, alive, 547 days 1979.3
TCGA-24-1431-01A 67 years, female, white, dead, 567 days 1971.1
TCGA-24-2038-01A 68 years, female, white, dead, 1354 days 1961.4
TCGA-04-1350-01A 46 years, female, white, dead, 1946 days 1923.3
TCGA-30-1891-01A 61 years, female, white, dead, 914 days 1914.5
TCGA-09-1661-01B 75 years, female, white, dead, 1169 days 1877.4
TCGA-29-2425-01A 60 years, female, white, alive, 1977 days 1861.3
TCGA-13-0901-01B 42 years, female, asian, alive, 589 days 1842.4
TCGA-23-1107-01A 59 years, female, white, dead, 9 days 1834.0
TCGA-61-2101-01A 55 years, female, white, dead, 1688 days 1831.0
TCGA-23-1024-01A 52 years, female, white, alive, 468 days 1811.8
TCGA-25-1634-01A 76 years, female, white, dead, 1091 days 1805.2
TCGA-23-1026-01B 45 years, female, white, alive, 816 days 1800.8
TCGA-13-0724-01A 72 years, female, white, dead, 83 days 1799.8
TCGA-04-1341-01A 85 years, female, white, alive, 33 days 1771.5
TCGA-04-1519-01A 48 years, female, alive, 24 days 1750.0
TCGA-13-1510-01A 62 years, female, white, dead, 1359 days 1736.5
TCGA-13-1477-01A 49 years, female, white, dead, 1662 days 1725.4
TCGA-13-1404-01A 48 years, female, white, alive, 2469 days 1691.8
TCGA-24-1471-01A 60 years, female, white, alive, 36 days 1685.3
TCGA-24-2033-01A 87 years, female, white, dead, 562 days 1659.8
TCGA-25-1632-01A 68 years, female, white, dead, 1799 days 1654.2
TCGA-24-1616-01A 56 years, female, white, dead, 1163 days 1632.0
TCGA-13-0900-01B 59 years, female, white, alive, 4077 days 1624.9
TCGA-09-2056-01B 62 years, female, white, alive, 379 days 1620.3
TCGA-13-0714-01A 55 years, female, white, dead, 189 days 1603.0
TCGA-10-0938-01A 80 years, female, white, dead, 636 days 1591.6
TCGA-29-1784-01A 55 years, female, white, alive, 163 days 1579.4
TCGA-04-1655-01A 49 years, female, white, dead, 1380 days 1555.8
TCGA-24-1553-01A 53 years, female, white, dead, 1767 days 1554.6
TCGA-25-1328-01A 38 years, female, white, dead, 2009 days 1545.0
TCGA-24-1464-01A 70 years, female, white, dead, 379 days 1544.7
TCGA-04-1651-01A 53 years, female, white, dead, 1102 days 1539.8
TCGA-61-1728-01A 59 years, female, white, alive, 848 days 1534.4
TCGA-57-1583-01A 57 years, female, black or african american, dead, 346 days 1523.1
TCGA-09-1662-01A 58 years, female, white, dead, 2717 days 1515.6
TCGA-13-0725-01A 44 years, female, white, dead, 377 days 1504.9
TCGA-20-1682-01A 56 years, female, white, alive, 837 days 1498.3
TCGA-10-0936-01A 69 years, female, black or african american, dead, 1123 days 1473.8
TCGA-13-0885-01A 70 years, female, white, alive, 3388 days 1441.4
TCGA-23-1113-01A 48 years, female, white, dead, 949 days 1437.6
TCGA-25-1316-01A 55 years, female, white, dead, 1279 days 1429.2
TCGA-20-1687-01A 46 years, female, white, alive, 81 days 1424.0
TCGA-13-1506-01A 45 years, female, white, dead, 1039 days 1415.2
TCGA-13-0765-01A 50 years, female, white, dead, 1389 days 1413.5
TCGA-04-1343-01A 72 years, female, white, dead, 361 days 1405.7
TCGA-20-0991-01A 78 years, female, white, alive, 797 days 1391.7
TCGA-20-0987-01A 61 years, female, white, dead, 701 days 1382.9
TCGA-29-1768-01A 50 years, female, white, dead, 952 days 1361.6
TCGA-29-2414-01A 75 years, female, white, dead, 2621 days 1360.0
TCGA-24-1103-01A 50 years, female, black or african american, dead, 1646 days 1357.4
TCGA-61-2110-01A 56 years, female, white, dead, 1354 days 1349.7
TCGA-24-1604-01A 67 years, female, white, dead, 2688 days 1335.3
TCGA-13-1505-01A 63 years, female, white, alive, 1998 days 1332.1
TCGA-36-1577-01A 43 years, female, asian, alive, 783 days 1326.1
TCGA-57-1582-01A female, white, dead, 731 days 1308.9
TCGA-24-0982-01A 77 years, female, white, dead, 679 days 1304.5
TCGA-09-0367-01A 67 years, female, native hawaiian or other pacific islander, dead, 547 days 1301.7
TCGA-57-1584-01A 47 years, female, white, alive, 643 days 1294.5
TCGA-13-1489-01A 70 years, female, white, dead, 2553 days 1281.4
TCGA-25-1631-01A 73 years, female, white, dead, 9 days 1276.8
TCGA-29-1761-01A 80 years, female, asian, dead, 528 days 1270.1
TCGA-24-1923-01A 51 years, female, white, dead, 690 days 1259.1
TCGA-24-1845-01A 42 years, female, white, alive, 116 days 1259.1
TCGA-13-1487-01A 74 years, female, white, dead, 681 days 1257.4
TCGA-24-1565-01A 74 years, female, white, dead, 312 days 1245.4
TCGA-61-2009-01A 65 years, female, white, alive, 1212 days 1238.6
TCGA-25-1321-01A 65 years, female, white, dead, 1033 days 1231.1
TCGA-24-1426-01A 43 years, female, white, alive, 163 days 1229.0
TCGA-61-2008-01A 40 years, female, asian, alive, 932 days 1226.4
TCGA-61-1721-01A 38 years, female, white, alive, 338 days 1223.3
TCGA-23-1030-01A 64 years, female, white, alive, 886 days 1220.9
TCGA-24-2024-01A 72 years, female, black or african american, dead, 1769 days 1220.5
TCGA-24-1544-01A 71 years, female, black or african american, dead, 820 days 1220.5
TCGA-25-1317-01A 66 years, female, white, dead, 61 days 1217.3
TCGA-29-1776-01A 63 years, female, black or african american, alive, 360 days 1195.4
TCGA-61-1919-01A 58 years, female, white, dead, 1161 days 1194.3
TCGA-13-0884-01B 39 years, female, white, dead, 3260 days 1191.4
TCGA-13-0920-01A 65 years, female, white, dead, 1484 days 1189.2
TCGA-25-1877-01A 81 years, female, white, dead, 730 days 1187.0
TCGA-24-1413-01A 51 years, female, white, alive, 192 days 1186.8
TCGA-13-0766-01A 42 years, female, white, dead, 1725 days 1178.7
TCGA-29-1770-01A 54 years, female, white, alive, 741 days 1161.0
TCGA-13-1408-01A 59 years, female, white, dead, 1680 days 1154.7
TCGA-29-1783-01A 58 years, female, white, alive, 220 days 1151.8
TCGA-09-1670-01A 57 years, female, white, alive, 547 days 1143.8
TCGA-24-1546-01A 46 years, female, white, dead, 1955 days 1141.5
TCGA-13-1509-01A 64 years, female, white, alive, 2438 days 1137.3
TCGA-04-1361-01A 57 years, female, white, alive, 989 days 1135.4
TCGA-13-0727-01A 71 years, female, white, dead, 462 days 1132.3
TCGA-13-1501-01A 50 years, female, white, dead, 1314 days 1122.4
TCGA-13-0888-01A 78 years, female, white, dead, 2811 days 1119.6
TCGA-24-2267-01A 58 years, female, white, dead, 1446 days 1110.4
TCGA-23-1023-01A 65 years, female, white, alive, 1233 days 1101.3
TCGA-29-1690-01A 66 years, female, white, dead, 1448 days 1098.8
TCGA-09-0369-01A 56 years, female, white, dead, 1082 days 1093.2
TCGA-59-2351-01A female, white, alive, 3532 days 1087.8
TCGA-30-1714-01A 68 years, female, white, dead, 1158 days 1072.3
TCGA-09-2053-01C 72 years, female, white, alive, 1209 days 1067.0
TCGA-24-1467-01A 51 years, female, white, dead, 3224 days 1065.3
TCGA-36-1569-01A 52 years, female, white, alive, 885 days 1064.9
TCGA-13-0911-01A 55 years, female, white, dead, 1355 days 1061.5
TCGA-10-0928-01A 71 years, female, white, dead, 563 days 1045.7
TCGA-30-1862-01A 65 years, female, white, dead, 186 days 1041.3
TCGA-29-1769-01A 40 years, female, white, alive, 699 days 1037.0
TCGA-04-1364-01A 61 years, female, white, dead, 1024 days 1032.9
TCGA-24-1842-01A 49 years, female, white, alive, 253 days 1032.1
TCGA-24-2281-01A 68 years, female, white, alive, 1357 days 1031.5
TCGA-24-1551-01A 53 years, female, white, dead, 1579 days 1030.4
TCGA-30-1860-01A 58 years, female, white, dead, 1366 days 1016.1
TCGA-61-2000-01A 67 years, female, white, alive, 441 days 1015.9
TCGA-30-1892-01A 52 years, female, white, dead, 1484 days 1007.6
TCGA-13-0887-01A 42 years, female, white, dead, 2028 days 1004.9
TCGA-13-0795-01A 66 years, female, white, dead, 619 days 1002.3
TCGA-23-1110-01A 42 years, female, white, alive, 1658 days 1000.0
TCGA-59-2355-01A female, white, dead, 65 days 997.4
TCGA-25-1870-01A 59 years, female, white, dead, 455 days 996.7
TCGA-13-0726-01A 55 years, female, white, dead, 949 days 995.1
TCGA-24-1428-01A 50 years, female, white, alive, 529 days 994.6
TCGA-13-0897-01A 54 years, female, white, dead, 2182 days 992.7
TCGA-10-0937-01A 44 years, female, white, dead, 608 days 988.3
TCGA-13-1407-01A 51 years, female, white, alive, 2534 days 986.7
TCGA-WR-A838-01A 72 years, female, black or african american, dead, 304 days 986.3
TCGA-13-0924-01A 45 years, female, white, alive, 2614 days 981.3
TCGA-61-2109-01A 40 years, female, white, dead, 629 days 967.8
TCGA-23-1109-01A 63 years, female, white, dead, 1562 days 964.3
TCGA-25-1630-01A 73 years, female, white, dead, 1162 days 962.6
TCGA-24-0979-01A 53 years, female, white, dead, 1264 days 960.6
TCGA-61-1736-01B 45 years, female, white, dead, 1484 days 959.1
TCGA-04-1365-01A 87 years, female, white, alive, 2329 days 954.5
TCGA-24-1562-01A 67 years, female, white, dead, 1384 days 952.6
TCGA-23-1118-01A 45 years, female, white, alive, 2616 days 946.8
TCGA-31-1956-01A 60 years, female, white, alive, 1342 days 942.3
TCGA-31-1959-01A 49 years, female, white, alive, 67 days 941.8
TCGA-24-1846-01A 45 years, female, alive, 133 days 941.4
TCGA-13-1499-01A 56 years, female, white, alive, 3500 days 932.0
TCGA-24-1416-01A 34 years, female, white, alive, 194 days 926.6
TCGA-24-0968-01A 59 years, female, white, dead, 598 days 920.7
TCGA-25-2401-01A 64 years, female, white, dead, 90 days 917.9
TCGA-13-1495-01A 60 years, female, white, dead, 2749 days 916.4
TCGA-61-1900-01A 51 years, female, black or african american, alive, 176 days 914.6
TCGA-23-2084-01A 45 years, female, white, dead, 1516 days 913.9
TCGA-36-1580-01A 82 years, female, dead, 737 days 906.9
TCGA-24-1844-01A 64 years, female, white, alive, 113 days 904.7
TCGA-24-1603-01A 53 years, female, white, dead, 2742 days 902.8
TCGA-13-0883-01A 61 years, female, white, dead, 2097 days 897.2
TCGA-09-1673-01A 50 years, female, white, alive, 92 days 881.3
TCGA-09-1669-01A 54 years, female, white, alive, 928 days 880.2
TCGA-61-1918-01A 45 years, female, white, dead, 479 days 878.0
TCGA-61-1738-01A 60 years, female, black or african american, dead, 1089 days 875.3
TCGA-30-1866-01A 61 years, female, white, dead, 1114 days 874.5
TCGA-13-1485-01A 48 years, female, white, dead, 629 days 874.5
TCGA-59-2363-01A female, asian, alive, 165 days 873.2
TCGA-29-1777-01A 47 years, female, white, alive, 374 days 869.6
TCGA-25-1623-01A 71 years, female, white, dead, 565 days 869.1
TCGA-25-2398-01A 71 years, female, white, dead, 1369 days 868.8
TCGA-24-2035-01A 65 years, female, white, dead, 857 days 867.8
TCGA-24-1105-01A 36 years, female, white, dead, 1442 days 866.6
TCGA-59-2352-01A female, white, dead, 286 days 863.8
TCGA-24-1552-01A 77 years, female, white, dead, 1259 days 863.5
TCGA-23-1119-01A 64 years, female, white, alive, 3953 days 861.1
TCGA-29-1774-01A 82 years, female, white, alive, 527 days 857.6
TCGA-24-2290-01A 56 years, female, white, dead, 1102 days 857.2
TCGA-13-1483-01A 61 years, female, white, dead, 895 days 856.5
TCGA-OY-A56Q-01A 78 years, female, black or african american, alive, 576 days 851.1
TCGA-13-1411-01A 81 years, female, white, dead, 531 days 849.5
TCGA-24-1430-01A 68 years, female, white, dead, 863 days 846.0
TCGA-23-1111-01A 63 years, female, white, alive, 98 days 842.8
TCGA-57-1586-01A 66 years, female, white, alive, 679 days 838.9
TCGA-13-0797-01A 49 years, female, white, alive, 2121 days 838.8
TCGA-09-2048-01A 63 years, female, white, dead, 138 days 837.5
TCGA-13-0730-01A 71 years, female, white, dead, 542 days 833.2
TCGA-24-0970-01B 63 years, female, white, dead, 354 days 828.9
TCGA-04-1338-01A 78 years, female, white, alive, 1418 days 828.2
TCGA-23-2077-01A 45 years, female, white, alive, 3525 days 825.2
TCGA-25-1312-01A 69 years, female, white, dead, 31 days 819.8
TCGA-13-0891-01A 73 years, female, white, dead, 3128 days 819.7
TCGA-30-1861-01A 74 years, female, white, dead, 1058 days 818.5
TCGA-24-1850-01A 72 years, female, white, alive, 168 days 809.8
TCGA-24-2261-01A 76 years, female, white, dead, 24 days 809.8
TCGA-29-1696-01A 43 years, female, white, dead, 1032 days 806.1
TCGA-09-2054-01A 58 years, female, black or african american, dead, 637 days 804.7
TCGA-61-1733-01A 71 years, female, white, alive, 967 days 802.9
TCGA-24-1924-01A 65 years, female, white, dead, 919 days 799.5
TCGA-25-1633-01A 64 years, female, white, dead, 1891 days 797.6
TCGA-61-1907-01A 63 years, female, white, alive, 952 days 796.4
TCGA-31-1946-01A 30 years, female, alive, 918 days 791.5
TCGA-31-1950-01A 76 years, female, white, alive, 571 days 790.9
TCGA-23-1028-01A 43 years, female, white, alive, 1503 days 790.4
TCGA-29-1695-01A 62 years, female, white, dead, 1229 days 788.1
TCGA-29-1701-01A 56 years, female, white, dead, 515 days 785.4
TCGA-57-1585-01A 57 years, female, white, dead, 53 days 778.7
TCGA-24-1435-01A 57 years, female, white, dead, 1324 days 778.0
TCGA-24-2271-01A 55 years, female, asian, dead, 962 days 776.8
TCGA-13-1507-01A 77 years, female, white, dead, 1993 days 776.0
TCGA-13-1492-01A 66 years, female, white, dead, 3819 days 765.6
TCGA-61-1725-01A 40 years, female, white, alive, 956 days 762.6
TCGA-13-1496-01A 65 years, female, white, dead, 129 days 762.2
TCGA-36-1571-01A 53 years, female, white, dead, 695 days 761.1
TCGA-61-2104-01A 53 years, female, white, alive, 2338 days 759.4
TCGA-61-1998-01A 48 years, female, white, alive, 168 days 758.9
TCGA-29-2427-01A 60 years, female, white, alive, 1900 days 755.3
TCGA-13-2060-01A 51 years, female, white, alive, 2369 days 751.6
TCGA-23-1116-01A 83 years, female, white, dead, 592 days 747.0
TCGA-13-0886-01A 67 years, female, white, alive, 4665 days 740.7
TCGA-25-1329-01A 76 years, female, white, dead, 457 days 738.0
TCGA-09-1665-01B 74 years, female, white, dead, 1266 days 733.1
TCGA-24-2023-01A 54 years, female, white, dead, 1364 days 732.1
TCGA-24-2280-01A 74 years, female, white, alive, 2143 days 730.9
TCGA-59-2350-01A female, dead, 679 days 730.0
TCGA-59-A5PD-01A 55 years, female, black or african american, dead, 624 days 714.6
TCGA-24-1550-01A 49 years, female, white, dead, 1249 days 714.4
TCGA-61-1995-01A 43 years, female, white, alive, 61 days 709.4
TCGA-29-1697-01A 62 years, female, white, dead, 949 days 707.0
TCGA-30-1857-01A 64 years, female, white, dead, 8 days 706.8
TCGA-25-1627-01A 73 years, female, white, dead, 394 days 703.9
TCGA-09-2044-01B 77 years, female, asian, alive, 186 days 702.9
TCGA-25-1323-01A 72 years, female, white, dead, 395 days 702.9
TCGA-24-2020-01A 67 years, female, white, dead, 4624 days 702.7
TCGA-24-1427-01A 58 years, female, alive, 147 days 700.8
TCGA-30-1718-01A 44 years, female, white, dead, 1579 days 700.4
TCGA-24-2026-01A 79 years, female, white, dead, 1059 days 699.6
TCGA-24-1418-01A 68 years, female, white, alive, 243 days 699.1
TCGA-61-1914-01A 65 years, female, alive, 1722 days 698.8
TCGA-24-1474-01A 57 years, female, black or african american, dead, 676 days 698.7
TCGA-61-2097-01A 71 years, female, white, alive, 1844 days 698.7
TCGA-29-1694-01A 45 years, female, white, dead, 1187 days 695.8
TCGA-20-1686-01A 75 years, female, white, alive, 89 days 692.9
TCGA-04-1332-01A 70 years, female, white, dead, 1247 days 689.5
TCGA-24-1434-01A 59 years, female, white, dead, 568 days 688.4
TCGA-61-2111-01A 61 years, female, white, alive, 3825 days 687.8
TCGA-13-1403-01A 48 years, female, white, dead, 2345 days 684.7
TCGA-24-2254-01A 66 years, female, white, dead, 1736 days 683.8
TCGA-29-1693-01A 72 years, female, white, alive, 3096 days 681.6
TCGA-29-1785-01A 55 years, female, white, dead, 1104 days 681.5
TCGA-13-0893-01B 48 years, female, black or african american, dead, 1319 days 666.1
TCGA-13-1498-01A 73 years, female, white, dead, 2012 days 657.0
TCGA-13-1497-01A 48 years, female, white, alive, 3871 days 646.4
TCGA-29-1781-01A 69 years, female, white, alive, 255 days 645.1
TCGA-61-1741-01A 76 years, female, white, dead, 1024 days 642.3
TCGA-24-1567-01A 54 years, female, white, dead, 524 days 641.9
TCGA-24-1470-01A 54 years, female, white, alive, 105 days 640.6
TCGA-24-1549-01A 58 years, female, white, dead, 1721 days 640.4
TCGA-24-2289-01A 69 years, female, white, dead, 2049 days 640.1
TCGA-04-1530-01A 68 years, female, white, dead, 3622 days 640.0
TCGA-13-1410-01A 57 years, female, white, alive, 2464 days 638.9
TCGA-61-2012-01A 81 years, female, white, alive, 932 days 636.9
TCGA-24-2293-01A 47 years, female, white, dead, 506 days 636.9
TCGA-29-1763-01A 43 years, female, black or african american, alive, 2032 days 634.4
TCGA-25-1318-01A 54 years, female, white, dead, 1064 days 633.0
TCGA-25-2409-01A 71 years, female, white, dead, 821 days 631.9
TCGA-VG-A8LO-01A 55 years, female, black or african american, dead, 24 days 630.4
TCGA-36-1568-01A 52 years, female, alive, 875 days 625.5
TCGA-29-1705-01A 48 years, female, white, dead, 555 days 620.0
TCGA-09-1667-01C 61 years, female, white, alive, 1882 days 617.5
TCGA-25-2400-01A 76 years, female, white, dead, 1278 days 615.1
TCGA-36-1576-01A 76 years, female, alive, 915 days 613.8
TCGA-13-1488-01A 59 years, female, white, dead, 2154 days 613.7
TCGA-24-1930-01A 53 years, female, white, dead, 2467 days 610.6
TCGA-29-1762-01A 59 years, female, white, dead, 2634 days 609.5
TCGA-09-0366-01A 56 years, female, white, dead, 1757 days 608.2
TCGA-24-1928-01A 77 years, female, white, dead, 336 days 606.0
TCGA-13-A5FT-01A 67 years, female, black or african american, alive, 2143 days 604.6
TCGA-23-1120-01A 60 years, female, white, alive, 130 days 603.6
TCGA-25-2042-01A 60 years, female, american indian or alaska native, dead, 396 days 601.2
TCGA-09-1666-01A 57 years, female, white, alive, 1752 days 597.1
TCGA-31-1953-01A 52 years, female, asian, alive, 204 days 596.4
TCGA-29-1778-01A 77 years, female, white, alive, 454 days 593.2
TCGA-61-1910-01A 56 years, female, white, alive, 1127 days 591.0
TCGA-24-2036-01A 50 years, female, white, dead, 1947 days 589.3
TCGA-04-1362-01A 59 years, female, white, dead, 1348 days 586.4
TCGA-23-1122-01A 53 years, female, white, dead, 1189 days 585.2
TCGA-13-0720-01A 48 years, female, white, dead, 1355 days 584.9
TCGA-24-2288-01A 70 years, female, white, dead, 25 days 583.4
TCGA-23-2078-01A 66 years, female, white, alive, 2661 days 582.3
TCGA-24-1843-01A 67 years, female, white, alive, 106 days 579.1
TCGA-29-1688-01A 39 years, female, white, dead, 2400 days 576.3
TCGA-13-0908-01B 58 years, female, white, dead, 1843 days 576.2
TCGA-24-1563-01A 66 years, female, black or african american, dead, 1451 days 572.6
TCGA-04-1648-01A 57 years, female, white, dead, 871 days 571.1
TCGA-25-1326-01A 61 years, female, white, dead, 1249 days 565.0
TCGA-23-1123-01A 59 years, female, white, dead, 1018 days 562.9
TCGA-29-1766-01A 74 years, female, white, dead, 1199 days 555.9
TCGA-20-1683-01A 65 years, female, white, alive, 772 days 555.2
TCGA-23-1029-01B 46 years, female, white, alive, 268 days 549.4
TCGA-13-0906-01A 50 years, female, white, alive, 3619 days 548.1
TCGA-24-1104-01A 56 years, female, white, dead, 1933 days 547.9
TCGA-13-0800-01A 52 years, female, white, alive, 2661 days 545.8
TCGA-61-1737-01A 42 years, female, white, alive, 1364 days 539.4
TCGA-61-1911-01A 55 years, female, white, alive, 1293 days 539.0
TCGA-24-1422-01A 82 years, female, black or african american, dead, 23 days 537.7
TCGA-24-2298-01A 56 years, female, white, dead, 1620 days 535.7
TCGA-36-1570-01A 49 years, female, white, alive, 655 days 534.3
TCGA-5X-AA5U-01A 61 years, female, black or african american, alive, 361 days 530.9
TCGA-25-2392-01A 75 years, female, white, dead, 31 days 527.7
TCGA-24-1417-01A 54 years, female, white, alive, 238 days 521.6
TCGA-24-1560-01A 51 years, female, white, dead, 1341 days 521.2
TCGA-61-2003-01A 53 years, female, white, alive, 122 days 520.3
TCGA-13-0923-01A 74 years, female, white, alive, 2547 days 520.2
TCGA-25-1319-01A 73 years, female, white, dead, 1977 days 518.5
TCGA-04-1514-01A 45 years, female, white, dead, 1720 days 518.4
TCGA-23-1114-01B 55 years, female, white, dead, 2089 days 515.4
TCGA-24-1469-01A 71 years, female, white, alive, 277 days 514.6
TCGA-25-2404-01A 38 years, female, american indian or alaska native, dead, 883 days 512.0
TCGA-29-1710-01A 54 years, female, white, dead, 951 days 510.2
TCGA-23-1809-01A 63 years, female, white, alive, 16 days 508.1
TCGA-25-2391-01A 57 years, female, white, dead, 1492 days 506.6
TCGA-25-1313-01A 62 years, female, white, dead, 820 days 503.6
TCGA-31-1944-01A 47 years, female, white, alive, 1386 days 503.5
TCGA-24-2027-01A 51 years, female, white, dead, 3337 days 499.2
TCGA-10-0933-01A 77 years, female, white, dead, 446 days 497.4
TCGA-29-1691-01A 51 years, female, white, dead, 1470 days 491.0
TCGA-29-A5NZ-01A 66 years, female, black or african american, dead, 1088 days 490.7
TCGA-25-1626-01A 65 years, female, white, dead, 518 days 485.7
TCGA-24-1419-01A 62 years, female, white, alive, 239 days 480.3
TCGA-36-1574-01A 48 years, female, asian, alive, 686 days 478.6
TCGA-13-1512-01A 49 years, female, white, alive, 442 days 478.1
TCGA-24-1424-01A 67 years, female, white, alive, 183 days 477.5
TCGA-25-1635-01A 71 years, female, white, dead, 1583 days 474.5
TCGA-61-2102-01A 74 years, female, white, dead, 197 days 470.7
TCGA-24-1557-01A 49 years, female, white, dead, 1213 days 468.6
TCGA-13-0916-01A 49 years, female, white, alive, 1785 days 467.6
TCGA-04-1356-01A 62 years, female, white, dead, 1499 days 461.2
TCGA-57-1994-01A 63 years, female, white, alive, 761 days 458.4
TCGA-04-1536-01A 60 years, female, black or african american, dead, 885 days 453.3
TCGA-25-1320-01A 65 years, female, white, dead, 1155 days 440.5
TCGA-25-1315-01A 50 years, female, white, dead, 1583 days 424.7
TCGA-25-1322-01A 62 years, female, white, dead, 91 days 422.5
TCGA-59-2348-01A female, white, alive, 5481 days 418.9
TCGA-09-2045-01A 50 years, female, asian, dead, 1069 days 417.0
TCGA-57-1993-01A 56 years, female, white, alive, 763 days 415.8
TCGA-25-1628-01A 67 years, female, white, dead, 627 days 411.8
TCGA-24-1847-01A 45 years, female, white, alive, 343 days 409.8
TCGA-59-2354-01A female, white, dead, 1046 days 409.7
TCGA-61-2098-01A 62 years, female, white, alive, 1993 days 409.4
TCGA-61-1724-01A 47 years, female, white, dead, 637 days 407.9
TCGA-29-2428-01A 58 years, female, white, alive, 1372 days 406.0
TCGA-09-2051-01A 42 years, female, white, alive, 1919 days 398.7
TCGA-31-1951-01A 58 years, female, white, alive, 684 days 397.1
TCGA-25-2399-01A 80 years, female, white, dead, 608 days 387.9
TCGA-24-2262-01A 57 years, female, white, dead, 11 days 386.2
TCGA-09-1668-01B 57 years, female, white, alive, 1684 days 379.5
TCGA-13-1405-01A 49 years, female, white, dead, 868 days 379.4
TCGA-13-0768-01A 73 years, female, white, dead, 1784 days 350.4
TCGA-24-2297-01A 56 years, female, white, dead, 1699 days 349.7
TCGA-24-1425-01A 45 years, female, white, alive, 181 days 339.7
TCGA-13-1511-01A 52 years, female, asian, dead, 1650 days 339.0
TCGA-04-1331-01A 79 years, female, white, dead, 1336 days 327.8
TCGA-29-1711-01A 45 years, female, black or african american, alive, 1053 days 309.9
TCGA-13-0905-01B 51 years, female, white, alive, 3746 days 303.5
TCGA-36-1581-01A 63 years, female, white, alive, 751 days 301.6
TCGA-24-1423-01A 61 years, female, white, alive, 190 days 285.8
TCGA-24-1558-01A 73 years, female, white, dead, 594 days 276.0
TCGA-61-2088-01A 51 years, female, white, alive, 145 days 248.0
TCGA-61-2113-01A 54 years, female, white, dead, 676 days 235.9
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OVARIAN CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more

Antibody HPA055133
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Click images for details

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The Human Protein Atlas

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.