MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:29.0 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:56.9 nTPM
Mouse:68.3 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2219 Male, age 76, both hemispheres 32.8
1827 Male, age 72, unknown 30.1
2019 Male, age 18, unknown 29.1
2586 Male, age 75, left hemisphere 29.1
2666 Male, age 74, left hemisphere 29.1
2411 Female, age 72, unknown 27.3
2828 Female, age 72, unknown 27.0
1870 Female, age 42, unknown 26.3
1833 Male, age 53, unknown 25.3
1830 Male, age 51, unknown 24.0
Dorsal raphe nucleus
nTPM: 29.6
2047 Male, age 72, unknown 32.6
1828 Male, age 53, unknown 32.5
2750 Male, age 76, both hemispheres 29.8
2298 Female, age 72, unknown 28.6
2016 Female, age 72, unknown 24.8
Inferior colliculus
nTPM: 26.7
2097 Female, age 72, unknown 30.1
1848 Female, age 42, unknown 26.1
1890 Male, age 53, unknown 25.6
2849 Male, age 72, unknown 24.8
Median raphe nucleus
nTPM: 33.8
2220 Male, age 76, midline 33.8
Pedunculopontine tegmental nucleus
nTPM: 27.2
2334 Male, age 80, both hemispheres 29.4
1921 Female, age 85, both hemispheres 28.5
2338 Male, age 61, both hemispheres 23.7
Periaquaductal grey, anterior
nTPM: 29.6
2502 Female, age 75, unknown 29.9
1795 Male, age 51, unknown 29.6
1947 Male, age 18, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 26.5
2464 Female, age 72, unknown 27.1
2850 Male, age 76, both hemispheres 27.1
1840 Male, age 53, unknown 26.4
1831 Male, age 72, unknown 25.5
Periaquaductal grey, lateral
nTPM: 24.2
2053 Male, age 18, unknown 26.0
2272 Male, age 74, both hemispheres 23.5
2140 Male, age 76, both hemispheres 23.0
Pretectal area
nTPM: 29.8
1816 Male, age 51, unknown 39.6
1817 Female, age 42, unknown 35.3
2007 Male, age 72, unknown 34.8
1944 Female, age 72, unknown 34.6
1815 Male, age 53, unknown 32.3
2667 Female, age 75, unknown 31.4
2224 Female, age 72, unknown 25.8
2825 Male, age 18, unknown 25.8
2407 Male, age 75, both hemispheres 24.2
2273 Male, age 74, both hemispheres 23.8
2316 Male, age 76, right hemisphere 20.2
Red nucleus
nTPM: 26.7
1821 Female, age 72, unknown 33.5
2725 Female, age 75, unknown 28.8
2588 Male, age 74, left hemisphere 28.5
1954 Female, age 42, unknown 27.6
2785 Male, age 18, unknown 27.2
2584 Male, age 75, left hemisphere 26.3
2503 Female, age 72, unknown 26.2
1865 Male, age 51, unknown 25.1
1904 Male, age 53, unknown 25.0
2769 Male, age 72, unknown 24.5
2227 Male, age 72, unknown 24.4
2823 Male, age 76, right hemisphere 23.9
Substantia nigra
nTPM: 34.2
1916 Female, age 42, unknown 43.4
1941 Male, age 53, unknown 37.7
2241 Male, age 72, unknown 37.4
1851 Male, age 51, unknown 36.8
2409 Female, age 72, unknown 34.3
1889 Female, age 72, unknown 33.8
2665 Male, age 74, both hemispheres 32.5
2699 Male, age 18, unknown 29.9
2590 Female, age 75, unknown 29.0
2583 Male, age 75, right hemisphere 27.2
Superior colliculus
nTPM: 27.6
2664 Male, age 75, both hemispheres 31.9
2087 Female, age 72, unknown 31.3
2261 Male, age 18, unknown 30.6
1796 Male, age 53, unknown 28.4
2587 Male, age 74, left hemisphere 27.5
2668 Female, age 75, unknown 27.3
1895 Male, age 76, right hemisphere 27.1
1839 Male, age 51, unknown 25.5
1913 Female, age 42, unknown 23.5
1995 Male, age 72, unknown 23.3
Ventral tegmental area
nTPM: 30.2
1915 Female, age 42, unknown 34.2
2218 Male, age 76, both hemispheres 34.1
2410 Female, age 72, unknown 32.9
1942 Male, age 51, unknown 27.4
2223 Female, age 72, unknown 26.5
2021 Male, age 53, unknown 26.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.0
Samples: 139

Max nTPM: 56.8
Min nTPM: 13.8
Std nTPM: 6.8
Median nTPM: 27.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 56.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 46.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 43.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 42.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 42.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 40.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 40.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 39.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 38.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.7
FF:10158-103A5 76 years, female 32.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.9
Pig sample Sample description nTPM
Midbrain
nTPM: 56.9
Samples: 4

Max nTPM: 67.7
Min nTPM: 50.5
Sample A Female 57.8
Sample B Female 51.6
Sample C Male 67.7
Sample D Male 50.5
Periaqueductal gray
nTPM: 49.3
Samples: 3

Max nTPM: 52.8
Min nTPM: 44.8
Sample B Female 50.4
Sample C Male 52.8
Sample D Male 44.8
Substantia nigra
nTPM: 55.5
Samples: 4

Max nTPM: 66.0
Min nTPM: 46.2
Sample A Female 66.0
Sample B Female 46.2
Sample C Male 63.0
Sample D Male 46.7
Superior colliculi
nTPM: 56.0
Samples: 4

Max nTPM: 64.9
Min nTPM: 45.5
Sample A Female 57.9
Sample B Female 45.5
Sample C Male 64.9
Sample D Male 55.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.3
Samples: 4

Max nTPM: 74.3
Min nTPM: 62.9
Sample A Male 62.9
Sample B Male 67.3
Sample C Female 74.3
Sample D Female 68.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68269688 Antisense, RP_041129_02_A09, Mouse strain C57BL/6J (56 days, male) 1.0
844 Antisense, RP_Baylor_102982, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.