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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:163.6 nTPM
GTEx:163.6 nTPM
FANTOM5:194.4 Scaled Tags Per Million
Pig:129.4 nTPM
Mouse:314.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 163.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 163.6
Samples: 105

Max nTPM: 250.2
Min nTPM: 112.7
Std nTPM: 26.3
Median nTPM:
413_1 59 years, female 250.2
491_1 89 years, female 238.0
490_1 67 years, female 223.2
149_1 88 years, male 223.0
162_1 79 years, female 208.1
415_1 77 years, female 207.3
324_1 76 years, male 202.1
139_1 64 years, female 201.7
89_1 63 years, male 201.3
43_1 64 years, female 200.9
32_1 67 years, male 200.1
501_1 88 years, male 199.3
414_1 84 years, female 198.8
308_1 70 years, female 198.3
145_1 84 years, male 197.6
466_1 57 years, female 195.4
307_1 66 years, female 194.4
81_1 67 years, male 187.7
126_1 63 years, male 187.4
2_1 77 years, female 186.1
495_1 57 years, female 184.5
396_1 62 years, male 184.2
18_1 88 years, male 182.1
142_1 61 years, female 178.3
117_1 61 years, male 177.7
348_1 84 years, male 177.0
468_1 89 years, male 176.8
347_1 72 years, male 176.4
120_1 70 years, female 175.0
266_1 85 years, male 174.7
115_1 83 years, male 174.5
265_1 87 years, male 173.4
288_1 66 years, female 170.9
518_1 75 years, female 170.4
109_1 81 years, female 169.7
119_1 70 years, female 169.6
229_1 69 years, female 169.5
254_1 77 years, female 169.3
316_1 62 years, male 169.3
9_1 66 years, female 169.1
315_1 62 years, female 169.1
499_1 55 years, female 168.6
6_1 73 years, female 167.8
375_1 74 years, female 167.6
17_1 71 years, male 165.4
313_1 79 years, female 165.1
447_1 81 years, male 164.2
386_1 76 years, male 164.1
172_1 72 years, female 163.7
217_1 76 years, male 163.6
246_1 77 years, male 162.1
379_1 60 years, male 161.8
321_1 62 years, female 161.4
526_1 61 years, male 161.3
311_1 78 years, male 160.7
404_1 82 years, female 160.7
173_1 67 years, male 160.2
41_1 94 years, female 160.1
314_1 67 years, male 158.8
335_1 73 years, female 158.7
177_1 74 years, male 158.6
292_1 71 years, male 158.3
189_1 76 years, male 156.2
377_1 82 years, female 156.2
480_1 63 years, male 154.4
425_1 59 years, female 153.7
153_1 70 years, female 153.4
349_1 83 years, male 151.7
286_1 68 years, female 151.1
322_1 76 years, male 150.4
384_1 83 years, male 148.8
251_1 78 years, male 148.4
376_1 75 years, female 148.2
291_1 76 years, male 147.6
503_1 68 years, male 147.6
389_1 86 years, female 146.4
295_1 61 years, female 145.6
318_1 68 years, male 145.6
406_1 79 years, male 145.6
137_1 83 years, male 145.3
99_1 64 years, male 143.9
405_1 91 years, male 143.4
4_1 88 years, female 142.5
243_1 75 years, male 142.1
35_1 74 years, female 142.0
42_1 85 years, male 139.3
353_1 82 years, female 139.3
354_1 81 years, female 138.0
317_1 60 years, male 137.6
293_1 68 years, female 137.4
517_1 88 years, male 136.1
319_1 81 years, male 134.8
352_1 62 years, male 134.8
452_1 88 years, female 132.6
163_1 78 years, male 130.3
355_1 70 years, female 129.8
351_1 91 years, male 129.3
506_1 65 years, male 129.3
320_1 89 years, female 128.9
237_1 82 years, male 127.3
350_1 84 years, female 125.0
264_1 73 years, female 121.8
218_1 71 years, female 115.7
394_1 75 years, female 115.5
356_1 87 years, female 112.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 194.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 194.4
FF:10030-101E3 24-65 years, mixed 194.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 129.4
Pig sample Sample description nTPM
Retina
nTPM: 129.5
Samples: 4

Max nTPM: 143.5
Min nTPM: 120.4
Sample A Female 120.4
Sample B Female 143.5
Sample C Male 130.0
Sample D Male 123.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 314.9
Mouse sample Sample description nTPM
Retina
nTPM: 314.9
Samples: 4

Max nTPM: 339.2
Min nTPM: 284.9
Sample A Male 304.4
Sample B Male 284.9
Sample C Female 331.1
Sample D Female 339.2

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