MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.4 nTPM
HPA:52.4 nTPM
GTEx:86.7 nTPM
FANTOM5:223.6 Scaled Tags Per Million
Pig:215.3 nTPM
Mouse:330.4 nTPM
Allen mouse:10.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.1
2019 Male, age 18, unknown 57.6
1827 Male, age 72, unknown 46.7
2411 Female, age 72, unknown 41.4
2666 Male, age 74, left hemisphere 39.5
2586 Male, age 75, left hemisphere 29.7
1870 Female, age 42, unknown 29.0
2219 Male, age 76, both hemispheres 28.3
1833 Male, age 53, unknown 23.9
1830 Male, age 51, unknown 22.8
2828 Female, age 72, unknown 22.2
Dorsal raphe nucleus
nTPM: 38.8
1828 Male, age 53, unknown 52.9
2047 Male, age 72, unknown 49.3
2298 Female, age 72, unknown 39.9
2750 Male, age 76, both hemispheres 39.5
2016 Female, age 72, unknown 12.5
Inferior colliculus
nTPM: 31.4
1848 Female, age 42, unknown 36.5
2097 Female, age 72, unknown 35.8
1890 Male, age 53, unknown 31.6
2849 Male, age 72, unknown 21.7
Median raphe nucleus
nTPM: 42.0
2220 Male, age 76, midline 42.0
Pedunculopontine tegmental nucleus
nTPM: 47.8
2338 Male, age 61, both hemispheres 53.5
1921 Female, age 85, both hemispheres 45.1
2334 Male, age 80, both hemispheres 44.7
Periaquaductal grey, anterior
nTPM: 26.3
1947 Male, age 18, unknown 37.6
1795 Male, age 51, unknown 27.1
2502 Female, age 75, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 19.3
2850 Male, age 76, both hemispheres 25.2
1840 Male, age 53, unknown 21.1
1831 Male, age 72, unknown 20.7
2464 Female, age 72, unknown 10.0
Periaquaductal grey, lateral
nTPM: 17.9
2272 Male, age 74, both hemispheres 29.0
2053 Male, age 18, unknown 16.3
2140 Male, age 76, both hemispheres 8.5
Pretectal area
nTPM: 46.3
1817 Female, age 42, unknown 80.9
1944 Female, age 72, unknown 80.2
2007 Male, age 72, unknown 78.7
1816 Male, age 51, unknown 74.0
1815 Male, age 53, unknown 48.5
2667 Female, age 75, unknown 45.4
2407 Male, age 75, both hemispheres 32.6
2273 Male, age 74, both hemispheres 28.5
2224 Female, age 72, unknown 21.0
2825 Male, age 18, unknown 13.9
2316 Male, age 76, right hemisphere 4.9
Red nucleus
nTPM: 30.2
1821 Female, age 72, unknown 54.8
2725 Female, age 75, unknown 50.0
2785 Male, age 18, unknown 44.2
1954 Female, age 42, unknown 30.9
2503 Female, age 72, unknown 30.8
1865 Male, age 51, unknown 28.8
2823 Male, age 76, right hemisphere 24.1
2584 Male, age 75, left hemisphere 22.6
1904 Male, age 53, unknown 19.8
2227 Male, age 72, unknown 18.7
2588 Male, age 74, left hemisphere 18.7
2769 Male, age 72, unknown 18.5
Substantia nigra
nTPM: 52.4
1916 Female, age 42, unknown 87.2
1941 Male, age 53, unknown 84.0
1889 Female, age 72, unknown 70.5
1851 Male, age 51, unknown 60.2
2241 Male, age 72, unknown 51.5
2665 Male, age 74, both hemispheres 42.3
2583 Male, age 75, right hemisphere 41.7
2409 Female, age 72, unknown 32.4
2590 Female, age 75, unknown 29.2
2699 Male, age 18, unknown 24.7
Superior colliculus
nTPM: 30.7
2087 Female, age 72, unknown 53.4
2668 Female, age 75, unknown 42.7
2261 Male, age 18, unknown 39.6
2587 Male, age 74, left hemisphere 36.3
1895 Male, age 76, right hemisphere 36.0
1796 Male, age 53, unknown 31.3
1839 Male, age 51, unknown 23.4
1913 Female, age 42, unknown 21.7
1995 Male, age 72, unknown 12.2
2664 Male, age 75, both hemispheres 10.7
Ventral tegmental area
nTPM: 38.2
2410 Female, age 72, unknown 58.9
2218 Male, age 76, both hemispheres 51.8
1915 Female, age 42, unknown 50.7
2223 Female, age 72, unknown 34.1
1942 Male, age 51, unknown 22.0
2021 Male, age 53, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 86.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.7
Samples: 139

Max nTPM: 287.4
Min nTPM: 20.3
Std nTPM: 37.5
Median nTPM: 77.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 287.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 251.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 186.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 176.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 172.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 164.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 163.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 151.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 150.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 146.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 139.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 223.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 223.6
FF:10158-103A5 76 years, female 223.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 215.3
Pig sample Sample description nTPM
Midbrain
nTPM: 204.9
Samples: 4

Max nTPM: 287.1
Min nTPM: 165.3
Sample A Female 183.6
Sample B Female 165.3
Sample C Male 287.1
Sample D Male 183.7
Periaqueductal gray
nTPM: 153.0
Samples: 3

Max nTPM: 177.2
Min nTPM: 134.6
Sample B Female 147.2
Sample C Male 177.2
Sample D Male 134.6
Substantia nigra
nTPM: 179.1
Samples: 4

Max nTPM: 247.6
Min nTPM: 117.5
Sample A Female 247.6
Sample B Female 149.3
Sample C Male 201.8
Sample D Male 117.5
Superior colliculi
nTPM: 215.3
Samples: 4

Max nTPM: 279.4
Min nTPM: 167.5
Sample A Female 220.5
Sample B Female 167.5
Sample C Male 279.4
Sample D Male 193.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 330.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 330.4
Samples: 4

Max nTPM: 359.1
Min nTPM: 272.5
Sample A Male 272.5
Sample B Male 350.7
Sample C Female 359.1
Sample D Female 339.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
69549024 Antisense, RP_050426_02_G06, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.