MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:55.8 nTPM
HPA:55.8 nTPM
GTEx:33.8 nTPM
FANTOM5:267.1 Scaled Tags Per Million
Pig:59.6 nTPM
Mouse:27.1 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.7
1830 Male, age 51, unknown 62.1
1833 Male, age 53, unknown 57.6
1870 Female, age 42, unknown 56.5
2411 Female, age 72, unknown 54.1
2019 Male, age 18, unknown 50.1
2828 Female, age 72, unknown 45.2
2219 Male, age 76, both hemispheres 35.3
1827 Male, age 72, unknown 34.6
2666 Male, age 74, left hemisphere 32.4
2586 Male, age 75, left hemisphere 19.3
Dorsal raphe nucleus
nTPM: 35.1
2750 Male, age 76, both hemispheres 53.4
2016 Female, age 72, unknown 37.2
1828 Male, age 53, unknown 33.6
2298 Female, age 72, unknown 26.0
2047 Male, age 72, unknown 25.4
Inferior colliculus
nTPM: 34.9
1848 Female, age 42, unknown 37.4
1890 Male, age 53, unknown 35.8
2849 Male, age 72, unknown 35.7
2097 Female, age 72, unknown 30.6
Median raphe nucleus
nTPM: 39.6
2220 Male, age 76, midline 39.6
Pedunculopontine tegmental nucleus
nTPM: 42.4
2334 Male, age 80, both hemispheres 44.1
2338 Male, age 61, both hemispheres 42.5
1921 Female, age 85, both hemispheres 40.7
Periaquaductal grey, anterior
nTPM: 30.1
2502 Female, age 75, unknown 33.7
1947 Male, age 18, unknown 32.6
1795 Male, age 51, unknown 23.9
Periaquaductal grey, dorsal
nTPM: 30.8
2464 Female, age 72, unknown 40.6
2850 Male, age 76, both hemispheres 36.1
1831 Male, age 72, unknown 29.6
1840 Male, age 53, unknown 16.8
Periaquaductal grey, lateral
nTPM: 36.8
2272 Male, age 74, both hemispheres 39.8
2053 Male, age 18, unknown 36.6
2140 Male, age 76, both hemispheres 34.1
Pretectal area
nTPM: 35.6
2316 Male, age 76, right hemisphere 50.1
2407 Male, age 75, both hemispheres 44.9
1815 Male, age 53, unknown 42.7
2667 Female, age 75, unknown 41.3
2273 Male, age 74, both hemispheres 39.6
2825 Male, age 18, unknown 34.6
1817 Female, age 42, unknown 31.7
2224 Female, age 72, unknown 31.1
2007 Male, age 72, unknown 29.3
1944 Female, age 72, unknown 25.3
1816 Male, age 51, unknown 20.5
Red nucleus
nTPM: 55.8
1865 Male, age 51, unknown 69.3
1904 Male, age 53, unknown 68.8
2823 Male, age 76, right hemisphere 62.7
1954 Female, age 42, unknown 62.6
1821 Female, age 72, unknown 62.1
2227 Male, age 72, unknown 59.0
2769 Male, age 72, unknown 57.2
2785 Male, age 18, unknown 56.4
2503 Female, age 72, unknown 52.7
2725 Female, age 75, unknown 43.7
2588 Male, age 74, left hemisphere 40.6
2584 Male, age 75, left hemisphere 34.7
Substantia nigra
nTPM: 34.0
2409 Female, age 72, unknown 43.5
2583 Male, age 75, right hemisphere 38.3
2241 Male, age 72, unknown 37.1
2590 Female, age 75, unknown 36.6
1851 Male, age 51, unknown 36.4
1889 Female, age 72, unknown 36.0
2699 Male, age 18, unknown 34.9
1941 Male, age 53, unknown 29.5
1916 Female, age 42, unknown 24.3
2665 Male, age 74, both hemispheres 23.7
Superior colliculus
nTPM: 41.3
1913 Female, age 42, unknown 63.3
1995 Male, age 72, unknown 59.8
1895 Male, age 76, right hemisphere 48.5
2587 Male, age 74, left hemisphere 43.5
1839 Male, age 51, unknown 42.8
2668 Female, age 75, unknown 35.8
1796 Male, age 53, unknown 32.3
2087 Female, age 72, unknown 32.0
2261 Male, age 18, unknown 29.7
2664 Male, age 75, both hemispheres 25.8
Ventral tegmental area
nTPM: 39.4
2410 Female, age 72, unknown 46.8
2223 Female, age 72, unknown 46.5
2021 Male, age 53, unknown 40.2
2218 Male, age 76, both hemispheres 37.2
1942 Male, age 51, unknown 33.9
1915 Female, age 42, unknown 31.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.8
Samples: 139

Max nTPM: 109.7
Min nTPM: 15.7
Std nTPM: 15.4
Median nTPM: 29.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 109.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 106.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 77.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 70.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 68.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 67.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 64.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 63.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 59.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 59.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 267.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 267.1
FF:10158-103A5 76 years, female 267.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.6
Pig sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 116.5
Min nTPM: 33.5
Sample A Female 116.5
Sample B Female 52.0
Sample C Male 33.5
Sample D Male 36.5
Periaqueductal gray
nTPM: 38.3
Samples: 3

Max nTPM: 44.2
Min nTPM: 32.0
Sample B Female 44.2
Sample C Male 32.0
Sample D Male 38.6
Substantia nigra
nTPM: 59.0
Samples: 4

Max nTPM: 88.6
Min nTPM: 36.0
Sample A Female 63.6
Sample B Female 36.0
Sample C Male 47.8
Sample D Male 88.6
Superior colliculi
nTPM: 45.0
Samples: 4

Max nTPM: 56.6
Min nTPM: 24.4
Sample A Female 56.6
Sample B Female 24.4
Sample C Male 44.7
Sample D Male 54.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 28.6
Min nTPM: 23.7
Sample A Male 23.7
Sample B Male 28.6
Sample C Female 28.3
Sample D Female 27.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
71234644 Antisense, RP_050505_02_G06, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.