MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:131.0 nTPM
HPA:131.0 nTPM
GTEx:56.9 nTPM
FANTOM5:169.9 Scaled Tags Per Million
Pig:68.6 nTPM
Mouse:14.6 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 131.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.7
2828 Female, age 72, unknown 120.2
1827 Male, age 72, unknown 73.2
1833 Male, age 53, unknown 70.3
1870 Female, age 42, unknown 67.1
2411 Female, age 72, unknown 67.1
1830 Male, age 51, unknown 63.2
2586 Male, age 75, left hemisphere 56.6
2666 Male, age 74, left hemisphere 44.2
2019 Male, age 18, unknown 39.2
2219 Male, age 76, both hemispheres 36.1
Dorsal raphe nucleus
nTPM: 84.8
2016 Female, age 72, unknown 116.2
1828 Male, age 53, unknown 94.3
2298 Female, age 72, unknown 81.2
2047 Male, age 72, unknown 74.0
2750 Male, age 76, both hemispheres 58.2
Inferior colliculus
nTPM: 70.3
2849 Male, age 72, unknown 88.5
1848 Female, age 42, unknown 78.3
2097 Female, age 72, unknown 59.9
1890 Male, age 53, unknown 54.6
Median raphe nucleus
nTPM: 54.4
2220 Male, age 76, midline 54.4
Pedunculopontine tegmental nucleus
nTPM: 63.2
1921 Female, age 85, both hemispheres 78.2
2334 Male, age 80, both hemispheres 59.6
2338 Male, age 61, both hemispheres 51.9
Periaquaductal grey, anterior
nTPM: 79.2
1947 Male, age 18, unknown 85.7
1795 Male, age 51, unknown 82.9
2502 Female, age 75, unknown 68.9
Periaquaductal grey, dorsal
nTPM: 102.7
2850 Male, age 76, both hemispheres 121.6
1840 Male, age 53, unknown 97.7
2464 Female, age 72, unknown 95.9
1831 Male, age 72, unknown 95.5
Periaquaductal grey, lateral
nTPM: 131.0
2053 Male, age 18, unknown 165.0
2140 Male, age 76, both hemispheres 141.4
2272 Male, age 74, both hemispheres 86.6
Pretectal area
nTPM: 94.3
2667 Female, age 75, unknown 143.6
2273 Male, age 74, both hemispheres 133.5
2825 Male, age 18, unknown 112.8
1944 Female, age 72, unknown 108.4
2316 Male, age 76, right hemisphere 97.7
2224 Female, age 72, unknown 84.3
2407 Male, age 75, both hemispheres 82.6
1816 Male, age 51, unknown 82.0
1815 Male, age 53, unknown 77.0
1817 Female, age 42, unknown 69.7
2007 Male, age 72, unknown 46.1
Red nucleus
nTPM: 62.7
2725 Female, age 75, unknown 78.5
1954 Female, age 42, unknown 69.4
1865 Male, age 51, unknown 69.2
2769 Male, age 72, unknown 68.5
2823 Male, age 76, right hemisphere 68.2
2227 Male, age 72, unknown 67.0
2503 Female, age 72, unknown 67.0
2588 Male, age 74, left hemisphere 63.1
1821 Female, age 72, unknown 62.8
1904 Male, age 53, unknown 62.4
2584 Male, age 75, left hemisphere 38.2
2785 Male, age 18, unknown 37.7
Substantia nigra
nTPM: 62.6
2699 Male, age 18, unknown 82.7
2409 Female, age 72, unknown 74.2
1916 Female, age 42, unknown 69.0
1889 Female, age 72, unknown 68.0
2590 Female, age 75, unknown 59.6
1851 Male, age 51, unknown 56.8
2241 Male, age 72, unknown 56.4
2583 Male, age 75, right hemisphere 56.3
2665 Male, age 74, both hemispheres 53.2
1941 Male, age 53, unknown 49.7
Superior colliculus
nTPM: 81.3
2087 Female, age 72, unknown 113.8
1995 Male, age 72, unknown 103.3
2261 Male, age 18, unknown 91.8
1913 Female, age 42, unknown 88.6
2664 Male, age 75, both hemispheres 83.7
1796 Male, age 53, unknown 80.4
1839 Male, age 51, unknown 72.8
2587 Male, age 74, left hemisphere 70.9
1895 Male, age 76, right hemisphere 60.5
2668 Female, age 75, unknown 47.2
Ventral tegmental area
nTPM: 68.2
2021 Male, age 53, unknown 91.2
2410 Female, age 72, unknown 70.7
2218 Male, age 76, both hemispheres 70.3
1942 Male, age 51, unknown 67.1
1915 Female, age 42, unknown 58.3
2223 Female, age 72, unknown 51.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.9
Samples: 139

Max nTPM: 396.9
Min nTPM: 2.6
Std nTPM: 62.1
Median nTPM: 36.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 396.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 301.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 275.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 243.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 234.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 226.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 213.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 198.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 176.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 172.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 135.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 169.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 169.9
FF:10158-103A5 76 years, female 169.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.6
Pig sample Sample description nTPM
Midbrain
nTPM: 45.8
Samples: 4

Max nTPM: 65.0
Min nTPM: 27.9
Sample A Female 27.9
Sample B Female 65.0
Sample C Male 48.1
Sample D Male 42.0
Periaqueductal gray
nTPM: 62.3
Samples: 3

Max nTPM: 72.3
Min nTPM: 49.8
Sample B Female 72.3
Sample C Male 64.9
Sample D Male 49.8
Substantia nigra
nTPM: 68.6
Samples: 4

Max nTPM: 83.8
Min nTPM: 57.2
Sample A Female 57.2
Sample B Female 62.6
Sample C Male 70.9
Sample D Male 83.8
Superior colliculi
nTPM: 35.1
Samples: 4

Max nTPM: 46.1
Min nTPM: 11.4
Sample A Female 44.0
Sample B Female 11.4
Sample C Male 38.8
Sample D Male 46.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.6
Sample A Male 15.9
Sample B Male 13.6
Sample C Female 14.1
Sample D Female 14.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
76003324 Antisense, RP_060608_02_B03, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.