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ARHGDIA
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:116.6 nTPM
HPA:116.6 nTPM
GTEx:194.0 nTPM
FANTOM5:125.0 Scaled Tags Per Million
Pig:72.4 nTPM
Mouse:321.8 nTPM
Allen mouse:17.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 116.6
Sample id Sample description nTPM
Amygdala
nTPM: 100.3
1987 Female, age 91, left hemisphere 103.7
2814 Male, age 76, right hemisphere 103.3
2517 Female, age 94, left hemisphere 102.8
2695 Female, age 67, right hemisphere 102.7
2514 Male, age 75, right hemisphere 89.1
Basal amygdala
nTPM: 116.6
2243 Female, age 91, right hemisphere 130.0
2685 Female, age 94, left hemisphere 123.3
2827 Female, age 67, right hemisphere 121.9
2110 Male, age 80, left hemisphere 112.6
2609 Male, age 75, right hemisphere 109.8
1955 Male, age 76, both hemispheres 101.7
Central amygdala
nTPM: 114.0
2826 Female, age 94, left hemisphere 135.2
2239 Male, age 80, left hemisphere 126.1
2701 Female, age 91, right hemisphere 108.1
2515 Male, age 75, right hemisphere 107.6
1905 Male, age 76, both hemispheres 92.7
Corticomedial amygdala
nTPM: 108.2
2829 Male, age 80, left hemisphere 131.1
2535 Female, age 67, right hemisphere 121.5
2242 Female, age 91, right hemisphere 119.6
2429 Female, age 94, left hemisphere 98.5
2428 Male, age 75, right hemisphere 90.6
2240 Male, age 76, both hemispheres 88.2
Lateral amygdala
nTPM: 112.2
2534 Female, age 94, left hemisphere 130.0
2830 Female, age 67, right hemisphere 116.8
2256 Male, age 80, left hemisphere 114.1
2255 Female, age 91, right hemisphere 109.7
1883 Male, age 76, both hemispheres 105.9
2516 Male, age 75, right hemisphere 96.6
Stria terminalis, bed nucleus
nTPM: 103.8
1974 Female, age 91, both hemispheres 110.4
2201 Male, age 74, unknown 101.8
2486 Female, age 94, both hemispheres 99.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 194.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 194.0
Samples: 152

Max nTPM: 345.5
Min nTPM: 103.7
Std nTPM: 42.5
Median nTPM: 186.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 345.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 303.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 295.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 293.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 290.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 290.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 288.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 275.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 274.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 273.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 268.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 266.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 260.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 258.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 251.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 247.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 246.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 246.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 245.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 241.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 239.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 238.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 237.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 237.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 237.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 236.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 229.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 229.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 229.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 226.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 225.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 223.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 222.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 222.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 218.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 217.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 214.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 214.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 213.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 213.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 213.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 211.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 211.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 211.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 210.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 209.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 209.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 208.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 208.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 208.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 208.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 207.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 206.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 204.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 203.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 202.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 202.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 201.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 200.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 198.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 198.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 197.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 197.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 197.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 195.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 194.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 194.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 194.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 193.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 193.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 192.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 191.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 191.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 190.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 189.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 186.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 186.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 185.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 185.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 184.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 184.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 183.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 183.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 183.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 182.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 182.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 182.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 181.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 181.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 178.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 178.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 178.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 177.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 177.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 177.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 176.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 176.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 176.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 176.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 174.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 174.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 172.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 172.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 171.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 171.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 170.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 170.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 170.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 170.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 170.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 169.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 168.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 168.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 168.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 167.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 166.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 166.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 165.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 164.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 164.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 161.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 160.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 158.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 156.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 155.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 155.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 155.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 155.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 154.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 153.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 153.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 153.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 152.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 149.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 149.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 147.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 147.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 146.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 144.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 144.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 141.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 138.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 135.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 135.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 128.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 125.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 124.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 120.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 119.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 115.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 104.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 103.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 125.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 125.0
FF:10151-102I7 76 years, female 125.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 72.4
Pig sample Sample description nTPM
Amygdala
nTPM: 72.4
Samples: 4

Max nTPM: 93.0
Min nTPM: 59.0
Sample A Female 93.0
Sample B Female 61.1
Sample C Male 76.4
Sample D Male 59.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 321.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 321.8
Samples: 4

Max nTPM: 345.2
Min nTPM: 307.3
Sample A Male 307.3
Sample B Male 310.0
Sample C Female 345.2
Sample D Female 324.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.6
75774677 Antisense, RP_060530_01_D02, Mouse strain C57BL/6J (56 days, male) 20.4
633678 Antisense, RP_040907_02_A10, Mouse strain C57BL/6J (56 days, male) 14.8

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