MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:148.9 nTPM
HPA:148.9 nTPM
GTEx:174.1 nTPM
FANTOM5:128.2 Scaled Tags Per Million
Pig:74.9 nTPM
Mouse:195.9 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.8
2586 Male, age 75, left hemisphere 154.6
2666 Male, age 74, left hemisphere 134.7
2828 Female, age 72, unknown 115.4
1827 Male, age 72, unknown 108.2
1870 Female, age 42, unknown 108.2
2411 Female, age 72, unknown 101.4
1833 Male, age 53, unknown 100.3
1830 Male, age 51, unknown 100.0
2219 Male, age 76, both hemispheres 94.4
2019 Male, age 18, unknown 90.8
Dorsal raphe nucleus
nTPM: 112.8
2047 Male, age 72, unknown 140.9
2750 Male, age 76, both hemispheres 129.7
2298 Female, age 72, unknown 111.1
1828 Male, age 53, unknown 98.6
2016 Female, age 72, unknown 83.7
Inferior colliculus
nTPM: 77.8
2849 Male, age 72, unknown 86.6
1890 Male, age 53, unknown 78.2
1848 Female, age 42, unknown 77.4
2097 Female, age 72, unknown 69.1
Median raphe nucleus
nTPM: 148.9
2220 Male, age 76, midline 148.9
Pedunculopontine tegmental nucleus
nTPM: 118.0
2338 Male, age 61, both hemispheres 134.5
2334 Male, age 80, both hemispheres 131.4
1921 Female, age 85, both hemispheres 88.1
Periaquaductal grey, anterior
nTPM: 114.9
1795 Male, age 51, unknown 128.3
1947 Male, age 18, unknown 114.9
2502 Female, age 75, unknown 101.4
Periaquaductal grey, dorsal
nTPM: 91.2
2850 Male, age 76, both hemispheres 102.0
1831 Male, age 72, unknown 89.4
1840 Male, age 53, unknown 87.0
2464 Female, age 72, unknown 86.4
Periaquaductal grey, lateral
nTPM: 86.9
2053 Male, age 18, unknown 87.6
2272 Male, age 74, both hemispheres 87.3
2140 Male, age 76, both hemispheres 85.8
Pretectal area
nTPM: 98.4
2007 Male, age 72, unknown 108.0
1815 Male, age 53, unknown 107.6
1816 Male, age 51, unknown 106.2
2825 Male, age 18, unknown 105.7
1817 Female, age 42, unknown 104.8
2407 Male, age 75, both hemispheres 104.3
1944 Female, age 72, unknown 102.0
2224 Female, age 72, unknown 96.5
2667 Female, age 75, unknown 96.5
2316 Male, age 76, right hemisphere 79.8
2273 Male, age 74, both hemispheres 71.2
Red nucleus
nTPM: 101.0
2584 Male, age 75, left hemisphere 146.6
2725 Female, age 75, unknown 110.4
2588 Male, age 74, left hemisphere 102.4
2785 Male, age 18, unknown 100.1
2769 Male, age 72, unknown 97.8
1865 Male, age 51, unknown 97.5
1904 Male, age 53, unknown 95.9
2823 Male, age 76, right hemisphere 95.6
2227 Male, age 72, unknown 92.5
1821 Female, age 72, unknown 92.4
2503 Female, age 72, unknown 90.5
1954 Female, age 42, unknown 89.9
Substantia nigra
nTPM: 128.0
1916 Female, age 42, unknown 174.0
2665 Male, age 74, both hemispheres 152.0
1851 Male, age 51, unknown 139.6
2583 Male, age 75, right hemisphere 135.5
1941 Male, age 53, unknown 131.1
2699 Male, age 18, unknown 130.8
2590 Female, age 75, unknown 113.9
1889 Female, age 72, unknown 105.2
2409 Female, age 72, unknown 101.7
2241 Male, age 72, unknown 95.8
Superior colliculus
nTPM: 99.1
2664 Male, age 75, both hemispheres 114.1
2668 Female, age 75, unknown 112.2
1796 Male, age 53, unknown 110.9
2261 Male, age 18, unknown 103.7
1913 Female, age 42, unknown 99.1
2587 Male, age 74, left hemisphere 97.6
2087 Female, age 72, unknown 94.6
1995 Male, age 72, unknown 93.4
1839 Male, age 51, unknown 90.0
1895 Male, age 76, right hemisphere 75.8
Ventral tegmental area
nTPM: 121.4
1915 Female, age 42, unknown 130.5
2223 Female, age 72, unknown 130.3
2021 Male, age 53, unknown 124.1
2218 Male, age 76, both hemispheres 120.2
2410 Female, age 72, unknown 113.7
1942 Male, age 51, unknown 109.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 174.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.1
Samples: 139

Max nTPM: 298.9
Min nTPM: 85.1
Std nTPM: 34.5
Median nTPM: 170.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 298.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 258.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 245.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 240.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 238.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 238.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 234.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 234.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 232.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 231.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 230.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.2
FF:10158-103A5 76 years, female 128.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.9
Pig sample Sample description nTPM
Midbrain
nTPM: 68.8
Samples: 4

Max nTPM: 109.0
Min nTPM: 47.5
Sample A Female 109.0
Sample B Female 64.8
Sample C Male 53.8
Sample D Male 47.5
Periaqueductal gray
nTPM: 57.3
Samples: 3

Max nTPM: 65.5
Min nTPM: 51.7
Sample B Female 54.8
Sample C Male 65.5
Sample D Male 51.7
Substantia nigra
nTPM: 74.9
Samples: 4

Max nTPM: 86.5
Min nTPM: 64.1
Sample A Female 86.5
Sample B Female 64.1
Sample C Male 81.1
Sample D Male 67.8
Superior colliculi
nTPM: 61.7
Samples: 4

Max nTPM: 71.9
Min nTPM: 55.7
Sample A Female 71.9
Sample B Female 57.3
Sample C Male 55.7
Sample D Male 61.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 195.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 195.9
Samples: 4

Max nTPM: 206.9
Min nTPM: 186.0
Sample A Male 202.2
Sample B Male 188.4
Sample C Female 186.0
Sample D Female 206.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
75774677 Antisense, RP_060530_01_D02, Mouse strain C57BL/6J (56 days, male) 12.2
633678 Antisense, RP_040907_02_A10, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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