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ARHGDIA
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:225.6 nTPM
HPA:185.1 nTPM
GTEx:225.6 nTPM
FANTOM5:225.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA021407Antibody CAB010005
Glandular cells Not detectedMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 185.1
overview
Male, age 65
Small intestine sample 232
nTPM: 168
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 195.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 178.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 198

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 225.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 225.6
Samples: 187

Max nTPM: 455.2
Min nTPM: 121.8
Std nTPM: 68.7
Median nTPM: 209.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 455.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 434.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 428.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 393.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 381.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 379.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 370.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 366.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 363.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 360.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 359.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 358.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 357.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 355.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 351.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 344.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 342.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 332.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 326.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 315.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 305.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 305.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 305.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 300.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 300.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 300.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 298.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 298.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 297.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 294.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 291.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 290.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 286.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 285.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 285.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 284.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 281.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 277.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 276.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 275.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 274.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 273.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 272.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 270.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 269.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 266.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 263.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 263.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 262.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 261.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 260.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 259.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 259.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 259.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 259.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 257.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 254.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 254.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 251.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 250.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 248.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 248.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 246.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 245.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 245.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 244.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 244.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 243.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 241.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 241.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 240.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 237.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 235.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 234.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 233.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 228.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 226.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 226.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 225.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 224.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 224.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 224.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 224.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 223.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 222.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 221.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 220.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 217.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 217.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 216.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 215.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 213.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 212.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 209.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 209.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 208.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 208.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 208.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 207.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 205.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 205.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 204.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 201.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 197.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 196.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 195.9
GTEX-1192X-2526-SM-59868 50-59 years, male 195.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 194.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 194.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 193.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 192.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 192.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 192.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 191.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 191.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 191.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 190.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 190.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 189.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 189.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 188.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 188.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 188.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 186.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 185.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 185.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 185.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 183.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 183.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 182.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 182.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 182.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 180.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 180.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 180.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 179.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 178.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 176.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 175.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 174.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 171.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 169.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 169.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 169.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 168.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 168.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 167.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 166.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 165.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 162.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 162.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 162.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 161.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 160.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 160.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 158.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 158.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 157.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 157.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 155.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 154.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 154.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 153.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 153.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 151.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 151.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 148.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 148.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 148.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 147.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 146.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 145.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 145.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 143.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 143.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 143.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 142.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 141.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 138.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 137.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 134.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 133.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 133.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 130.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 127.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 126.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 121.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 225.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 225.9
FF:10024-101D6 15,40,85 years, mixed 225.9

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The Human Protein Atlas project is funded
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