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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:104.8 nTPM
HPA:104.8 nTPM
GTEx:210.1 nTPM
FANTOM5:75.9 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 104.8
Sample id Sample description nTPM
Amygdala
nTPM: 104.7
2517 Female, age 94, left hemisphere 107.9
1987 Female, age 91, left hemisphere 106.0
2514 Male, age 75, right hemisphere 104.5
2814 Male, age 76, right hemisphere 102.9
2695 Female, age 67, right hemisphere 102.3
Basal amygdala
nTPM: 102.2
2609 Male, age 75, right hemisphere 105.5
2110 Male, age 80, left hemisphere 104.6
2243 Female, age 91, right hemisphere 101.6
1955 Male, age 76, both hemispheres 101.5
2685 Female, age 94, left hemisphere 101.2
2827 Female, age 67, right hemisphere 99.0
Central amygdala
nTPM: 104.8
2826 Female, age 94, left hemisphere 113.6
2515 Male, age 75, right hemisphere 108.2
1905 Male, age 76, both hemispheres 103.2
2239 Male, age 80, left hemisphere 101.2
2701 Female, age 91, right hemisphere 97.7
Corticomedial amygdala
nTPM: 102.7
2428 Male, age 75, right hemisphere 108.0
2829 Male, age 80, left hemisphere 106.8
2429 Female, age 94, left hemisphere 103.9
2242 Female, age 91, right hemisphere 101.3
2535 Female, age 67, right hemisphere 98.2
2240 Male, age 76, both hemispheres 98.0
Lateral amygdala
nTPM: 104.5
2516 Male, age 75, right hemisphere 113.4
2534 Female, age 94, left hemisphere 111.5
1883 Male, age 76, both hemispheres 103.4
2256 Male, age 80, left hemisphere 100.2
2255 Female, age 91, right hemisphere 99.7
2830 Female, age 67, right hemisphere 98.5
Stria terminalis, bed nucleus
nTPM: 100.9
1974 Female, age 91, both hemispheres 107.1
2486 Female, age 94, both hemispheres 99.4
2201 Male, age 74, unknown 96.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 210.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 210.1
Samples: 152

Max nTPM: 788.1
Min nTPM: 72.8
Std nTPM: 85.3
Median nTPM: 199.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 788.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 527.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 521.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 482.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 447.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 351.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 344.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 338.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 322.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 321.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 320.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 318.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 318.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 285.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 281.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 276.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 273.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 270.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 266.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 264.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 260.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 259.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 258.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 258.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 257.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 256.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 255.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 255.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 254.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 254.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 250.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 247.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 246.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 243.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 240.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 240.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 239.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 237.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 233.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 230.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 229.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 228.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 228.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 227.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 227.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 226.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 226.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 222.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 221.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 220.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 219.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 219.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 219.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 217.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 216.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 215.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 215.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 214.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 213.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 212.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 211.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 211.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 210.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 210.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 206.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 205.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 204.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 202.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 202.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 202.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 202.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 201.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 201.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 200.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 200.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 200.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 199.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 194.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 192.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 191.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 191.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 189.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 188.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 187.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 187.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 187.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 185.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 184.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 183.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 181.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 180.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 180.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 180.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 180.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 180.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 179.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 179.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 179.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 177.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 177.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 174.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 174.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 171.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 169.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 169.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 169.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 167.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 166.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 166.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 166.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 162.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 159.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 158.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 158.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 157.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 156.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 156.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 154.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 153.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 153.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 151.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 150.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 150.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 149.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 149.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 149.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 147.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 147.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 146.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 146.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 145.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 145.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 143.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 143.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 143.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 139.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 136.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 136.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 135.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 134.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 134.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 129.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 126.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 123.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 120.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 118.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 112.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 103.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 103.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 103.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 99.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 72.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 75.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 75.9
FF:10151-102I7 76 years, female 75.9

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