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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:110.4 nTPM
HPA:110.4 nTPM
GTEx:136.4 nTPM
FANTOM5:47.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 110.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 107.1
1981 Female, age 72, midline 115.7
2565 Male, age 75, midline 109.0
2194 Female, age 79, both hemispheres 107.1
2048 Male, age 55, midline 102.6
2816 Male, age 47, midline 101.4
Cervical spinal cord, dorsal horn
nTPM: 106.6
2173 Female, age 72, unknown 116.5
2296 Male, age 66, both hemispheres 111.9
2069 Male, age 47, both hemispheres 111.1
1877 Male, age 55, unknown 104.2
2297 Male, age 75, both hemispheres 100.0
2721 Male, age 90, both hemispheres 95.8
Cervical spinal cord, ventral horn
nTPM: 110.4
2098 Female, age 72, unknown 117.9
2809 Male, age 90, both hemispheres 112.9
2480 Male, age 75, both hemispheres 112.6
2068 Male, age 55, unknown 109.1
2295 Male, age 66, both hemispheres 109.1
2820 Female, age 79, both hemispheres 100.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 136.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 136.4
Samples: 159

Max nTPM: 247.7
Min nTPM: 58.2
Std nTPM: 31.9
Median nTPM: 134.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 247.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 242.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 232.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 218.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 205.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 202.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 201.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 195.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 187.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 186.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 186.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 183.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 180.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 176.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 176.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 175.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 175.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 172.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 170.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 169.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 168.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 167.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 167.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 166.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 164.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 164.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 163.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 162.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 161.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 161.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 160.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 160.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 160.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 159.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 156.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 155.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 154.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 154.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 153.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 153.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 153.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 152.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 152.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 151.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 151.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 151.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 150.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 150.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 150.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 149.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 148.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 148.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 148.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 148.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 147.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 147.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 146.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 145.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 145.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 144.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 143.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 143.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 142.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 142.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 142.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 141.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 141.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 140.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 140.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 139.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 139.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 138.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 138.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 137.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 137.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 136.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 136.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 136.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 135.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 134.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 134.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 134.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 133.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 133.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 132.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 129.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 129.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 129.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 128.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 128.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 127.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 126.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 126.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 126.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 125.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 125.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 125.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 124.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 124.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 123.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 122.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 122.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 122.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 122.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 121.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 120.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 120.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 120.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 120.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 119.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 118.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 117.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 117.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 117.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 115.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 113.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 113.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 113.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 112.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 112.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 111.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 110.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 110.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 110.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 109.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 108.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 108.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 108.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 107.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 107.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 106.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 106.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 106.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 105.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 104.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 104.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 103.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 103.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 102.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 101.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 100.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 100.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 100.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 99.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 99.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 97.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 95.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 92.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 91.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 90.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 90.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 86.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 85.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 85.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 84.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 83.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 68.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 58.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 47.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 47.5
FF:10181-103D1 60 years, female 60.3
FF:10159-103A6 76 years, female 34.7

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