HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.7 nTPM
HPA:17.7 nTPM
GTEx:18.1 nTPM
FANTOM5:50.6 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:24.3 nTPM
Allen mouse:11.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.7
Sample id Sample description nTPM
Hippocampus
nTPM: 16.6
2148 Female, age 91, left hemisphere 20.2
1911 Female, age 85, right hemisphere 16.9
2529 Female, age 94, left hemisphere 16.5
2621 Female, age 67, right hemisphere 16.3
1898 Male, age 80, left hemisphere 15.8
1855 Male, age 76, left hemisphere 13.7
Dentate gyrus
nTPM: 17.3
2530 Female, age 94, left hemisphere 19.6
2010 Male, age 76, both hemispheres 17.9
2531 Female, age 67, both hemispheres 17.4
1927 Female, age 91, both hemispheres 16.9
2246 Female, age 85, both hemispheres 16.0
2528 Male, age 74, both hemispheres 15.9
Entorhinal gyrus
nTPM: 16.8
1787 Male, age 76, left hemisphere 18.1
2613 Female, age 94, left hemisphere 17.7
2117 Female, age 91, right hemisphere 17.1
2764 Male, age 80, right hemisphere 16.4
2686 Male, age 75, right hemisphere 15.9
1938 Female, age 85, left hemisphere 15.4
Hippocampus, CA1
nTPM: 16.6
2082 Female, age 91, right hemisphere 17.0
2749 Male, age 80, left hemisphere 17.0
2527 Male, age 74, both hemispheres 16.9
2045 Male, age 76, both hemispheres 16.5
1873 Female, age 85, both hemispheres 15.9
Hippocampus, CA2
nTPM: 16.9
2113 Female, age 91, right hemisphere 18.6
1892 Male, age 76, both hemispheres 18.1
1963 Male, age 80, left hemisphere 17.4
2249 Male, age 74, both hemispheres 16.5
1940 Female, age 85, left hemisphere 16.1
2437 Female, age 94, left hemisphere 14.8
Hippocampus, CA3
nTPM: 16.6
2620 Female, age 94, left hemisphere 19.0
1867 Male, age 76, both hemispheres 16.9
2861 Female, age 67, both hemispheres 16.5
1891 Female, age 85, both hemispheres 16.4
2137 Male, age 80, left hemisphere 15.9
2436 Male, age 74, both hemispheres 15.2
Parahippocampal cortex
nTPM: 17.7
2622 Female, age 67, right hemisphere 19.1
2018 Male, age 76, both hemispheres 18.4
2250 Female, age 67, right hemisphere 18.4
1990 Female, age 91, right hemisphere 18.1
2245 Female, age 91, both hemispheres 18.0
2692 Male, age 74, both hemispheres 18.0
1933 Female, age 85, both hemispheres 17.8
2532 Female, age 72, left hemisphere 17.3
1850 Male, age 80, both hemispheres 16.3
2693 Female, age 94, both hemispheres 15.3
Perirhinal gyrus
nTPM: 17.1
1841 Female, age 85, right hemisphere 18.1
2521 Female, age 94, right hemisphere 17.8
2848 Male, age 76, right hemisphere 17.5
1794 Male, age 80, right hemisphere 16.4
1847 Female, age 91, left hemisphere 15.9
Subiculum
nTPM: 15.4
1977 Female, age 85, both hemispheres 16.8
2729 Female, age 91, right hemisphere 16.6
2042 Male, age 76, both hemispheres 16.2
2619 Male, age 74, both hemispheres 16.2
1901 Male, age 80, both hemispheres 14.2
2438 Female, age 94, left hemisphere 12.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.1
Samples: 197

Max nTPM: 40.4
Min nTPM: 6.5
Std nTPM: 5.3
Median nTPM: 16.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 40.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 30.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 30.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 30.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 30.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 29.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 29.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 29.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 28.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 28.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 27.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 50.6
FF:10153-102I9 76 years, female 54.2
FF:10169-103B7 60 years, female 47.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 17.3
Samples: 4

Max nTPM: 21.2
Min nTPM: 11.7
Sample A Female 21.2
Sample B Female 19.6
Sample C Male 16.6
Sample D Male 11.7
Entorhinal cortex
nTPM: 19.4
Samples: 4

Max nTPM: 23.0
Min nTPM: 17.1
Sample A Female 18.6
Sample B Female 18.9
Sample C Male 23.0
Sample D Male 17.1
Subiculum
nTPM: 16.6
Samples: 4

Max nTPM: 21.8
Min nTPM: 12.9
Sample A Female 21.8
Sample B Female 14.6
Sample C Male 17.1
Sample D Male 12.9
Ventral hippocampus
nTPM: 17.5
Samples: 4

Max nTPM: 22.1
Min nTPM: 13.0
Sample A Female 15.8
Sample B Female 13.0
Sample C Male 22.1
Sample D Male 19.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.0
Samples: 4

Max nTPM: 25.7
Min nTPM: 22.5
Sample A Male 22.9
Sample B Male 25.7
Sample C Female 24.8
Sample D Female 22.5
Hippocampal formation
nTPM: 24.3
Samples: 4

Max nTPM: 25.2
Min nTPM: 22.9
Sample A Male 24.8
Sample B Male 24.4
Sample C Female 25.2
Sample D Female 22.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.3
583563 Antisense, RP_040831_02_F11, Mouse strain C57BL/6J (56 days, male) 11.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.