BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.6 nTPM
HPA:24.6 nTPM
GTEx:15.2 nTPM
FANTOM5:34.9 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:45.0 nTPM
Allen mouse:17.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.6
1781 Male, age 74, unknown 11.4
2288 Male, age 75, left hemisphere 11.1
2289 Male, age 61, right hemisphere 10.4
1857 Female, age 85, left hemisphere 10.2
2290 Female, age 72, unknown 9.5
2846 Female, age 79, unknown 9.3
1854 Male, age 80, left hemisphere 8.5
2481 Female, age 94, left hemisphere 6.1
Claustrum
nTPM: 24.6
2645 Female, age 72, unknown 39.0
2568 Male, age 61, both hemispheres 36.5
2198 Male, age 80, both hemispheres 29.4
2284 Female, age 91, both hemispheres 29.3
2491 Male, age 75, both hemispheres 27.5
2392 Female, age 94, both hemispheres 17.7
1956 Male, age 74, unknown 15.4
2292 Female, age 85, both hemispheres 14.8
2196 Female, age 79, unknown 11.7
Globus pallidus, externus
nTPM: 4.1
2772 Female, age 79, unknown 6.2
2567 Female, age 72, unknown 5.6
2646 Male, age 61, right hemisphere 4.7
1996 Male, age 80, right hemisphere 2.3
2395 Male, age 75, both hemispheres 2.0
Globus pallidus, internus
nTPM: 3.1
1818 Male, age 74, unknown 5.7
2483 Female, age 94, right hemisphere 4.6
2037 Male, age 80, right hemisphere 4.3
2566 Female, age 72, unknown 4.0
2111 Female, age 85, right hemisphere 1.6
2778 Female, age 91, both hemispheres 0.9
2287 Male, age 75, right hemisphere 0.4
Nucleus accumbens
nTPM: 7.6
1783 Male, age 74, unknown 10.5
2824 Male, age 61, right hemisphere 10.2
2286 Male, age 75, left hemisphere 9.7
1856 Female, age 91, right hemisphere 8.4
1806 Female, age 85, left hemisphere 8.3
2698 Female, age 72, unknown 6.0
2391 Female, age 94, left hemisphere 5.2
2732 Male, age 80, right hemisphere 2.7
Nucleus basalis of Meynert
nTPM: 8.0
2484 Female, age 94, left hemisphere 10.4
2393 Male, age 80, right hemisphere 9.4
2821 Male, age 75, both hemispheres 7.5
2569 Male, age 61, both hemispheres 4.7
Nucleus of the diagonal band
nTPM: 11.5
2029 Male, age 61, right hemisphere 15.7
2775 Male, age 80, right hemisphere 14.9
2195 Female, age 85, both hemispheres 14.7
1812 Female, age 91, both hemispheres 8.5
1979 Male, age 74, unknown 3.6
Olfactory tubercle
nTPM: 16.8
2856 Male, age 75, right hemisphere 23.6
1998 Female, age 91, both hemispheres 17.4
2487 Female, age 94, left hemisphere 14.9
1846 Male, age 80, right hemisphere 11.3
Putamen
nTPM: 10.9
2647 Male, age 75, left hemisphere 16.6
2489 Female, age 72, unknown 13.2
1838 Male, age 80, right hemisphere 11.6
1829 Male, age 74, unknown 10.0
2466 Female, age 79, unknown 9.5
1937 Female, age 91, right hemisphere 7.7
2482 Female, age 94, left hemisphere 7.7
Septal nuclei
nTPM: 9.9
1960 Male, age 74, unknown 15.4
2059 Female, age 85, both hemispheres 13.4
2629 Female, age 94, right hemisphere 12.0
2031 Female, age 72, unknown 11.8
2009 Female, age 91, both hemispheres 8.0
2394 Male, age 61, left hemisphere 5.3
2199 Male, age 80, right hemisphere 3.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 50.6
Min nTPM: 0.4
Std nTPM: 6.9
Median nTPM: 13.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 50.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 34.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 29.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 29.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 28.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 28.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 27.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 27.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 26.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 26.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 25.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.2
Samples: 246

Max nTPM: 50.3
Min nTPM: 0.9
Std nTPM: 6.9
Median nTPM: 15.5
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 50.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 37.5
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 31.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 28.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 28.4
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 27.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 27.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 27.4
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 26.9
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 26.3
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 26.1
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Brain - Putamen (basal ganglia)
Average nTPM: 14.3
Samples: 205

Max nTPM: 43.1
Min nTPM: 1.0
Std nTPM: 7.1
Median nTPM: 14.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 43.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 30.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 30.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 28.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 28.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 28.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 28.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 27.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 26.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 25.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 24.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.0
FF:10164-103B2 76 years, female 20.0
Globus pallidus
Scaled Tags Per Million: 5.1
FF:10175-103C4 60 years, female 5.5
FF:10161-103A8 76 years, female 4.6
Nucleus accumbens
Scaled Tags Per Million: 34.9
FF:10037-101F1 23-56 years, mixed 34.9
Putamen
Scaled Tags Per Million: 21.5
FF:10176-103C5 60 years, female 21.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.5
Sample A Female 0.7
Sample B Female 0.5
Sample C Male 0.5
Sample D Male 0.5
Putamen
nTPM: 0.9
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.6
Sample A Female 1.5
Sample B Female 0.6
Sample C Male 0.7
Sample D Male 0.6
Septum
nTPM: 1.6
Samples: 4

Max nTPM: 3.8
Min nTPM: 0.6
Sample A Female 1.2
Sample B Female 0.6
Sample C Male 3.8
Sample D Male 0.7
Ventral pallidum
nTPM: 1.3
Samples: 4

Max nTPM: 3.2
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.9
Sample C Male 3.2
Sample D Male 0.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.1
Samples: 4

Max nTPM: 32.2
Min nTPM: 12.4
Sample A Male 12.4
Sample B Male 12.7
Sample C Female 32.2
Sample D Female 22.9
Septum
nTPM: 45.0
Samples: 4

Max nTPM: 56.4
Min nTPM: 32.2
Sample A Male 32.2
Sample B Male 56.4
Sample C Female 39.4
Sample D Female 51.9
Ventral forebrain
nTPM: 36.7
Samples: 4

Max nTPM: 46.4
Min nTPM: 24.2
Sample A Male 42.0
Sample B Male 24.2
Sample C Female 34.0
Sample D Female 46.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 17.8
293472 Antisense, RP_040604_02_G10, Mouse strain C57BL/6J (56 days, male) 21.5
74357598 Antisense, RP_060119_03_A01, Mouse strain C57BL/6J (56 days, male) 14.1
Pallidum
Expression energy: 16.7
293472 Antisense, RP_040604_02_G10, Mouse strain C57BL/6J (56 days, male) 21.3
74357598 Antisense, RP_060119_03_A01, Mouse strain C57BL/6J (56 days, male) 12.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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