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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:36.5 nTPM
HPA:36.5 nTPM
GTEx:60.0 nTPM
FANTOM5:82.6 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:79.5 nTPM
Allen mouse:14.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Amygdala
nTPM: 36.5
2814 Male, age 76, right hemisphere 44.3
2695 Female, age 67, right hemisphere 37.8
2514 Male, age 75, right hemisphere 33.9
1987 Female, age 91, left hemisphere 33.8
2517 Female, age 94, left hemisphere 32.9
Basal amygdala
nTPM: 31.3
2609 Male, age 75, right hemisphere 41.0
1955 Male, age 76, both hemispheres 37.1
2110 Male, age 80, left hemisphere 34.8
2243 Female, age 91, right hemisphere 27.2
2685 Female, age 94, left hemisphere 25.5
2827 Female, age 67, right hemisphere 22.5
Central amygdala
nTPM: 31.3
1905 Male, age 76, both hemispheres 42.8
2515 Male, age 75, right hemisphere 32.3
2239 Male, age 80, left hemisphere 30.0
2826 Female, age 94, left hemisphere 27.9
2701 Female, age 91, right hemisphere 23.6
Corticomedial amygdala
nTPM: 30.0
2829 Male, age 80, left hemisphere 39.7
2428 Male, age 75, right hemisphere 34.2
2429 Female, age 94, left hemisphere 30.1
2242 Female, age 91, right hemisphere 26.1
2240 Male, age 76, both hemispheres 25.9
2535 Female, age 67, right hemisphere 23.9
Lateral amygdala
nTPM: 33.6
2516 Male, age 75, right hemisphere 37.1
2256 Male, age 80, left hemisphere 35.8
1883 Male, age 76, both hemispheres 35.6
2534 Female, age 94, left hemisphere 34.7
2255 Female, age 91, right hemisphere 29.3
2830 Female, age 67, right hemisphere 29.2
Stria terminalis, bed nucleus
nTPM: 27.8
1974 Female, age 91, both hemispheres 30.8
2486 Female, age 94, both hemispheres 29.3
2201 Male, age 74, unknown 23.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 60.0
Samples: 152

Max nTPM: 109.2
Min nTPM: 23.3
Std nTPM: 17.6
Median nTPM: 60.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 109.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 103.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 102.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 100.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 100.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 100.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 97.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 95.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 93.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 88.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 88.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 85.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 83.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 82.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 81.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 81.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 80.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 79.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 78.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 78.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 76.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 76.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 75.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 75.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 74.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 74.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 74.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 73.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 72.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 71.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 71.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 71.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 70.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 70.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 70.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 69.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 69.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 69.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 69.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 69.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 68.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 68.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 68.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 67.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 67.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 66.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 65.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 65.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 65.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 64.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 64.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 64.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 63.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 63.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 63.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 63.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 63.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 63.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 63.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 62.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 61.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 61.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 61.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 61.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 60.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 60.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 60.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 60.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 60.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 60.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 60.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 59.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 59.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 59.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 59.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 59.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 59.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 58.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 58.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 58.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 57.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 57.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 57.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 57.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 56.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 56.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 56.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 56.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 55.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 55.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 53.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 53.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 53.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 53.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 53.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 52.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 52.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 52.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 51.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 51.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 51.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 50.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 49.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 48.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 48.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 47.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 47.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 47.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 45.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 45.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 45.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 45.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 45.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 45.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 43.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 42.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 42.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 41.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 41.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 41.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 40.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 40.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 40.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 39.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 39.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 39.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 38.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 37.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 37.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 37.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 36.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 35.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 35.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 35.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 33.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 32.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 32.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 32.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 31.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 31.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 28.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 27.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 24.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 23.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 82.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 82.6
FF:10151-102I7 76 years, female 82.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.6
Pig sample Sample description nTPM
Amygdala
nTPM: 19.7
Samples: 4

Max nTPM: 26.2
Min nTPM: 16.0
Sample A Female 26.2
Sample B Female 16.0
Sample C Male 18.7
Sample D Male 17.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 79.5
Samples: 4

Max nTPM: 83.9
Min nTPM: 74.9
Sample A Male 83.9
Sample B Male 82.8
Sample C Female 76.3
Sample D Female 74.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.1
68341860 Antisense, RP_041207_02_C12, Mouse strain C57BL/6J (56 days, male) 17.1
795 Antisense, RP_Baylor_102958, Mouse strain C57BL/6J (56 days, male) 11.1

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