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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:728.7 nTPM
HPA:728.7 nTPM
FANTOM5:239.8 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max nTPM 728.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 701.8
2396 Male, age 61, right hemisphere 868.2
2497 Male, age 66, unknown 641.1
2032 Female, age 42, unknown 596.2
Centromedial thalamic nucleus
nTPM: 639.3
2279 Female, age 85, left hemisphere 657.5
2401 Male, age 76, right hemisphere 621.1
Habenula
nTPM: 635.3
2276 Male, age 66, unknown 667.6
1957 Male, age 80, both hemispheres 653.0
2252 Male, age 62, unknown 629.5
2203 Male, age 61, left hemisphere 591.0
Lateral geniculate body
nTPM: 629.8
2857 Male, age 74, right hemisphere 687.6
2575 Female, age 94, right hemisphere 682.4
2659 Male, age 66, unknown 637.5
2841 Male, age 80, both hemispheres 635.9
2035 Female, age 72, unknown 616.3
2106 Female, age 67, right hemisphere 597.3
1953 Male, age 62, unknown 595.1
2399 Male, age 61, left hemisphere 586.5
Lateral thalamic nuclei
nTPM: 643.6
2573 Female, age 94, left hemisphere 686.9
2661 Female, age 72, unknown 658.8
1903 Male, age 76, left hemisphere 651.6
2577 Male, age 74, both hemispheres 616.6
2765 Female, age 67, both hemispheres 604.1
Medial dorsal thalamic nucleus
nTPM: 673.4
2572 Female, age 94, right hemisphere 894.2
1971 Male, age 61, right hemisphere 760.4
1810 Male, age 48, unknown 707.4
2576 Male, age 74, both hemispheres 683.6
1930 Female, age 42, unknown 668.9
2498 Male, age 66, unknown 666.4
2402 Female, age 67, both hemispheres 640.1
2283 Male, age 80, right hemisphere 638.8
1859 Male, age 76, both hemispheres 638.1
2026 Male, age 62, unknown 636.6
2660 Female, age 72, unknown 618.5
2039 Female, age 72, unknown 613.6
2492 Male, age 75, right hemisphere 587.5
Medial geniculate body
nTPM: 643.7
2650 Female, age 94, left hemisphere 700.5
2049 Male, age 76, both hemispheres 668.9
2657 Male, age 74, right hemisphere 664.7
2207 Male, age 80, right hemisphere 662.2
2217 Female, age 72, unknown 644.7
1811 Female, age 42, unknown 610.0
2571 Male, age 75, right hemisphere 554.7
Nucleus reuniens
nTPM: 633.7
2205 Male, age 80, left hemisphere 663.1
2212 Female, age 67, left hemisphere 625.1
2210 Female, age 85, left hemisphere 612.8
Nucleus rhomboideus
nTPM: 666.5
2213 Female, age 67, left hemisphere 728.3
2206 Male, age 80, both hemispheres 645.1
2280 Female, age 85, left hemisphere 626.1
Posterior thalamic nucleus
nTPM: 728.7
2649 Female, age 94, both hemispheres 970.4
2495 Female, age 67, right hemisphere 662.4
2655 Male, age 74, right hemisphere 650.8
2266 Male, age 76, right hemisphere 631.4
Pulvinar
nTPM: 632.5
2499 Male, age 66, unknown 687.7
1932 Male, age 80, right hemisphere 653.8
2214 Male, age 76, right hemisphere 648.9
2582 Female, age 72, unknown 647.9
2724 Male, age 74, right hemisphere 639.7
2496 Female, age 67, right hemisphere 628.0
1899 Female, age 42, unknown 618.9
1929 Male, age 48, unknown 606.0
1972 Male, age 62, unknown 599.3
2398 Male, age 61, left hemisphere 594.8
Subthalamic nucleus
nTPM: 615.7
2658 Male, age 74, both hemispheres 665.2
2216 Male, age 48, unknown 619.0
2124 Male, age 62, unknown 613.9
2779 Female, age 42, unknown 612.3
2275 Male, age 66, unknown 609.8
2056 Female, age 72, unknown 608.7
2282 Male, age 61, both hemispheres 605.5
2406 Female, age 72, unknown 591.4
Ventral posterolateral thalamic nucleus
nTPM: 630.0
2397 Male, age 61, right hemisphere 692.0
2197 Male, age 80, both hemispheres 665.9
2740 Male, age 76, right hemisphere 612.1
2581 Female, age 72, unknown 608.9
2578 Male, age 74, both hemispheres 605.4
2570 Male, age 75, right hemisphere 595.8
Ventral posteromedial thalamic nucleus
nTPM: 637.6
2202 Male, age 61, left hemisphere 697.3
2127 Male, age 76, right hemisphere 665.8
2758 Male, age 80, both hemispheres 639.7
2653 Male, age 74, both hemispheres 624.4
2281 Male, age 75, right hemisphere 561.0
Ventral thalamic nuclei
nTPM: 637.0
2204 Male, age 80, both hemispheres 673.2
2291 Female, age 72, unknown 656.2
2580 Male, age 66, unknown 650.8
1860 Male, age 76, both hemispheres 648.1
2285 Male, age 62, unknown 639.5
1912 Female, age 42, unknown 625.7
1845 Male, age 48, unknown 623.0
2858 Female, age 72, unknown 622.2
2652 Male, age 74, left hemisphere 594.4
Ventromedial nucleus
nTPM: 566.1
1822 Female, age 42, unknown 570.3
1982 Female, age 72, unknown 561.9
Zona incerta
nTPM: 622.4
2208 Male, age 80, right hemisphere 669.8
2822 Male, age 74, right hemisphere 645.0
2403 Male, age 62, unknown 618.4
2663 Female, age 72, unknown 590.3
2215 Male, age 66, unknown 588.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 239.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 239.8
FF:10154-103A1 76 years, female 239.8

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