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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:639.0 nTPM
HPA:639.0 nTPM
GTEx:483.8 nTPM
FANTOM5:275.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 639.0
Sample id Sample description nTPM
Amygdala
nTPM: 639.0
2695 Female, age 67, right hemisphere 710.0
1987 Female, age 91, left hemisphere 646.3
2814 Male, age 76, right hemisphere 638.5
2517 Female, age 94, left hemisphere 606.1
2514 Male, age 75, right hemisphere 594.0
Basal amygdala
nTPM: 609.5
1955 Male, age 76, both hemispheres 626.8
2827 Female, age 67, right hemisphere 618.5
2110 Male, age 80, left hemisphere 614.2
2243 Female, age 91, right hemisphere 613.8
2609 Male, age 75, right hemisphere 600.7
2685 Female, age 94, left hemisphere 583.3
Central amygdala
nTPM: 636.0
2826 Female, age 94, left hemisphere 686.3
2515 Male, age 75, right hemisphere 648.3
1905 Male, age 76, both hemispheres 629.1
2239 Male, age 80, left hemisphere 618.6
2701 Female, age 91, right hemisphere 597.5
Corticomedial amygdala
nTPM: 604.3
2240 Male, age 76, both hemispheres 626.0
2242 Female, age 91, right hemisphere 612.7
2829 Male, age 80, left hemisphere 606.5
2428 Male, age 75, right hemisphere 602.1
2535 Female, age 67, right hemisphere 594.4
2429 Female, age 94, left hemisphere 584.0
Lateral amygdala
nTPM: 625.0
2830 Female, age 67, right hemisphere 663.2
2534 Female, age 94, left hemisphere 640.3
2256 Male, age 80, left hemisphere 621.2
1883 Male, age 76, both hemispheres 612.7
2516 Male, age 75, right hemisphere 610.9
2255 Female, age 91, right hemisphere 602.1
Stria terminalis, bed nucleus
nTPM: 568.3
2201 Male, age 74, unknown 587.7
1974 Female, age 91, both hemispheres 567.9
2486 Female, age 94, both hemispheres 549.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 483.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 483.8
Samples: 152

Max nTPM: 3972.5
Min nTPM: 88.9
Std nTPM: 434.8
Median nTPM: 347.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3972.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2450.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1702.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1576.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1263.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1229.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1161.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1112.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1112.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1042.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1007.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1001.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 988.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 911.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 875.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 857.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 841.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 839.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 832.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 786.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 785.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 782.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 759.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 757.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 755.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 728.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 720.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 717.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 701.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 695.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 679.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 660.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 625.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 598.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 598.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 588.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 568.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 566.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 557.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 546.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 539.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 534.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 530.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 516.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 514.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 511.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 503.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 486.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 480.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 477.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 473.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 468.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 464.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 462.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 460.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 451.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 446.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 435.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 435.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 429.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 426.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 420.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 418.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 417.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 410.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 403.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 402.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 395.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 384.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 368.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 363.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 360.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 359.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 354.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 353.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 348.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 345.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 344.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 339.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 327.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 326.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 326.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 322.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 322.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 319.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 318.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 317.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 311.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 311.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 305.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 305.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 302.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 298.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 294.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 293.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 291.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 289.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 288.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 284.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 282.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 280.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 279.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 277.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 277.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 276.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 274.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 273.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 272.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 271.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 270.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 269.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 265.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 264.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 263.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 263.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 259.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 258.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 255.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 254.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 253.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 248.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 247.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 244.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 241.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 241.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 235.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 231.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 229.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 228.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 217.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 213.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 211.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 204.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 199.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 193.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 188.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 186.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 179.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 171.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 167.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 162.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 159.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 157.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 156.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 149.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 144.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 143.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 141.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 141.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 131.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 89.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 88.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 275.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 275.0
FF:10151-102I7 76 years, female 275.0

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