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COL6A1
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TISSUE PRIMARY DATA OVARY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Ovary
Tissue proteome
Ovary
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Follicle cells: Not detected
Ovarian stroma cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:491.4 nTPM
HPA:253.0 nTPM
GTEx:491.4 nTPM
FANTOM5:712.0 Scaled Tags Per Million

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA019142Antibody HPA029401
Follicle cells -Not detected
Ovarian stroma cells MediumNot detected





OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 253.0
overview
Female, age 64
Ovary sample 192
nTPM: 244.8
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 399
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 115.1
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5


OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 491.4
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 491.4
Samples: 180

Max nTPM: 1055.2
Min nTPM: 181.5
Std nTPM: 164.3
Median nTPM: 481.3
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 1055.2
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 1028.3
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 1014.5
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 1007.5
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 933.0
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 899.9
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 899.3
GTEX-14JG6-0626-SM-68716 30-39 years, female 850.1
GTEX-S341-0726-SM-4AD5R 40-49 years, female 827.6
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 821.6
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 785.9
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 765.3
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 730.1
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 721.2
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 710.5
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 698.3
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 687.8
GTEX-QCQG-1426-SM-48U22 50-59 years, female 684.2
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 676.1
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 664.8
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 655.0
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 650.2
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 648.0
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 643.0
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 632.8
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 631.3
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 628.3
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 628.1
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 621.1
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 617.5
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 615.5
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 611.6
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 608.3
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 607.7
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 603.6
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 598.4
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 596.5
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 593.8
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 593.1
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 593.0
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 584.6
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 583.3
GTEX-11I78-1926-SM-59878 50-59 years, female 583.2
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 581.0
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 580.5
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 580.2
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 579.8
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 578.5
GTEX-14PKV-1226-SM-6871T 20-29 years, female 574.0
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 573.4
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 570.2
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 569.9
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 565.1
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 558.9
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 557.7
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 554.2
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 553.5
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 545.1
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 542.6
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 542.0
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 540.4
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 537.8
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 534.3
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 529.1
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 528.4
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 528.3
GTEX-14BIN-1426-SM-664NI 50-59 years, female 524.9
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 522.3
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 519.0
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 517.4
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 515.6
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 511.9
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 508.1
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 506.9
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 505.0
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 504.5
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 501.1
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 500.2
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 499.9
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 498.3
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 495.3
GTEX-QVJO-3126-SM-COH22 60-69 years, female 493.5
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 493.0
GTEX-18D9A-0826-SM-718C1 30-39 years, female 493.0
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 492.2
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 491.1
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 491.0
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 490.1
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 486.4
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 482.3
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 480.3
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 475.5
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 471.0
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 468.1
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 466.1
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 466.0
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 461.3
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 459.5
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 457.6
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 449.7
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 449.5
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 446.1
GTEX-P78B-1926-SM-3P616 40-49 years, female 445.6
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 444.8
GTEX-13SLX-2426-SM-664OM 50-59 years, female 440.7
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 437.6
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 436.4
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 436.1
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 435.3
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 430.7
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 430.2
GTEX-Q734-0726-SM-48TZP 40-49 years, female 428.8
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 427.6
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 426.5
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 425.9
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 424.7
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 418.4
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 417.6
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 416.4
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 415.8
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 414.7
GTEX-1GF9X-2426-SM-7SB7W 40-49 years, female 410.5
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 410.1
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 407.7
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 407.2
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 405.2
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 398.7
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 396.9
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 394.1
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 392.5
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 390.8
GTEX-15EOM-1526-SM-68723 20-29 years, female 385.6
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 384.6
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 382.4
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 381.2
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 377.3
GTEX-R55G-1526-SM-48FER 40-49 years, female 375.5
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 374.3
GTEX-RU72-2226-SM-46MUE 50-59 years, female 368.6
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 368.6
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 364.6
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 359.5
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 357.7
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 354.3
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 352.1
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 351.3
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 341.7
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 340.7
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 340.0
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 336.9
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 332.7
GTEX-ZV6S-1426-SM-59HKX 40-49 years, female 331.7
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 331.3
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 327.3
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 322.2
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 318.3
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 316.2
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 314.0
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 305.7
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 302.7
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 298.6
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 297.9
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 294.0
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 285.3
GTEX-1LVAN-2726-SM-CNPQG 50-59 years, female 282.0
GTEX-1F88F-2126-SM-9KNUK 60-69 years, female 267.1
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 262.4
GTEX-183WM-1926-SM-72D5F 70-79 years, female 261.6
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 260.0
GTEX-1GN1U-2326-SM-9MQK4 50-59 years, female 259.2
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 259.1
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 258.4
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 257.9
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 256.8
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 251.0
GTEX-S32W-1226-SM-4AD67 50-59 years, female 250.4
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 249.1
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 234.7
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 231.4
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 181.5
Show allShow less

OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 712.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 712.0
FF:10020-101D2 47,75,84 years, female 712.0

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