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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:158.1 nTPM
HPA:158.1 nTPM
GTEx:41.8 nTPM
FANTOM5:263.5 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 158.1
overview
Male, age 65
Small intestine sample 232
nTPM: 293.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 89.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 100.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 149

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 41.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 41.8
Samples: 187

Max nTPM: 351.0
Min nTPM: 0.0
Std nTPM: 55.8
Median nTPM: 18.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 351.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 222.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 206.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 205.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 204.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 182.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 179.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 171.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 170.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 146.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 143.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 142.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 141.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 132.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 131.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 126.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 125.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 125.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 121.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 121.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 117.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 110.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 109.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 109.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 108.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 108.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 102.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 100.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 99.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 95.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 95.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 91.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 88.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 88.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 82.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 82.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 80.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 77.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 77.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 76.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 74.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 73.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 68.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 67.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 67.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 66.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 64.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 63.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 61.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 60.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 57.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 57.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 53.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 52.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 52.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 51.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 49.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 49.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 49.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 46.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 46.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 45.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 44.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 42.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 40.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 39.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 39.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 36.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 36.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 36.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 34.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 34.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 33.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 32.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 31.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 31.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 29.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 28.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 27.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 26.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 25.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 25.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 24.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 24.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 23.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 23.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 22.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 21.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 21.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 20.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 19.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 18.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 18.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 18.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 15.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 15.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 14.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 14.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 13.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 13.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 13.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 12.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 11.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 11.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 11.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 10.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 9.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 9.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 9.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 8.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 8.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 8.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 7.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 6.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 6.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 6.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 6.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 5.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 5.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 5.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 5.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 4.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 4.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 3.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 3.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 3.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 3.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 3.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 1.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 0.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 0.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 0.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 0.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 0.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 0.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 0.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 0.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 0.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 0.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 0.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.5
GTEX-1192X-2526-SM-59868 50-59 years, male 0.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 0.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 0.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 0.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 0.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 0.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 0.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 0.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 263.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 263.5
FF:10024-101D6 15,40,85 years, mixed 263.5

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