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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:136.0 nTPM
HPA:136.0 nTPM
GTEx:100.0 nTPM
FANTOM5:66.0 Scaled Tags Per Million
Pig:89.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 136.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 132.9
1981 Female, age 72, midline 144.2
2565 Male, age 75, midline 131.7
2194 Female, age 79, both hemispheres 131.1
2048 Male, age 55, midline 129.2
2816 Male, age 47, midline 128.5
Cervical spinal cord, dorsal horn
nTPM: 136.0
2173 Female, age 72, unknown 145.5
2069 Male, age 47, both hemispheres 141.8
2296 Male, age 66, both hemispheres 140.6
1877 Male, age 55, unknown 132.0
2297 Male, age 75, both hemispheres 128.3
2721 Male, age 90, both hemispheres 127.9
Cervical spinal cord, ventral horn
nTPM: 133.5
2098 Female, age 72, unknown 141.6
2809 Male, age 90, both hemispheres 135.6
2068 Male, age 55, unknown 135.2
2480 Male, age 75, both hemispheres 132.5
2295 Male, age 66, both hemispheres 129.6
2820 Female, age 79, both hemispheres 126.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 100.0
Samples: 159

Max nTPM: 157.2
Min nTPM: 60.7
Std nTPM: 18.2
Median nTPM: 98.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 157.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 143.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 139.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 139.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 136.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 136.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 136.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 134.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 133.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 132.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 131.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 131.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 130.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 127.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 127.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 127.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 126.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 126.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 124.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 124.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 124.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 124.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 119.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 119.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 119.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 118.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 118.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 116.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 116.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 116.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 116.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 115.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 114.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 113.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 113.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 113.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 113.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 111.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 110.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 110.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 109.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 109.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 109.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 109.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 108.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 108.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 108.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 107.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 106.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 106.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 106.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 106.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 105.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 105.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 105.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 105.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 105.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 104.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 104.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 104.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 103.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 103.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 103.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 102.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 102.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 102.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 101.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 101.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 101.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 100.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 100.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 100.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 100.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 100.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 99.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 98.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 98.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 98.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 98.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 98.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 98.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 97.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 97.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 97.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 97.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 97.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 97.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 97.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 96.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 96.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 95.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 95.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 95.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 93.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 93.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 93.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 93.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 93.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 92.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 92.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 91.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 91.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 91.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 91.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 90.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 90.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 90.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 89.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 89.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 89.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 89.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 88.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 88.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 88.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 88.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 88.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 87.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 85.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 85.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 85.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 85.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 85.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 85.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 84.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 84.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 84.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 83.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 83.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 83.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 83.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 83.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 82.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 81.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 81.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 80.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 80.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 80.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 80.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 80.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 79.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 79.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 78.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 77.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 77.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 75.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 75.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 74.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 74.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 74.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 72.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 72.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 70.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 70.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 69.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 68.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 66.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 64.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 60.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 66.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 66.0
FF:10181-103D1 60 years, female 75.0
FF:10159-103A6 76 years, female 57.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 75.3
Samples: 4

Max nTPM: 87.0
Min nTPM: 68.1
Sample A Female 75.8
Sample B Female 70.4
Sample C Male 87.0
Sample D Male 68.1
Ventral spinal cord
nTPM: 89.8
Samples: 4

Max nTPM: 100.1
Min nTPM: 79.3
Sample A Female 88.7
Sample B Female 100.1
Sample C Male 91.1
Sample D Male 79.3

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