BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:4.1 nTPM
HPA:4.1 nTPM
GTEx:9.2 nTPM
FANTOM5:3.8 Scaled Tags Per Million
Pig:2.3 nTPM
Mouse:3.3 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.1
2289 Male, age 61, right hemisphere 4.5
2290 Female, age 72, unknown 4.5
1854 Male, age 80, left hemisphere 4.3
1857 Female, age 85, left hemisphere 4.3
2846 Female, age 79, unknown 4.0
1781 Male, age 74, unknown 3.9
2288 Male, age 75, left hemisphere 3.8
2481 Female, age 94, left hemisphere 3.2
Claustrum
nTPM: 3.1
2284 Female, age 91, both hemispheres 3.8
2198 Male, age 80, both hemispheres 3.7
2568 Male, age 61, both hemispheres 3.4
2645 Female, age 72, unknown 3.3
2491 Male, age 75, both hemispheres 3.1
2196 Female, age 79, unknown 3.0
1956 Male, age 74, unknown 2.8
2392 Female, age 94, both hemispheres 2.7
2292 Female, age 85, both hemispheres 2.5
Globus pallidus, externus
nTPM: 3.6
2772 Female, age 79, unknown 4.7
2646 Male, age 61, right hemisphere 3.5
2567 Female, age 72, unknown 3.3
1996 Male, age 80, right hemisphere 3.2
2395 Male, age 75, both hemispheres 3.2
Globus pallidus, internus
nTPM: 3.2
1818 Male, age 74, unknown 4.3
2483 Female, age 94, right hemisphere 3.9
2037 Male, age 80, right hemisphere 3.3
2566 Female, age 72, unknown 3.1
2287 Male, age 75, right hemisphere 2.7
2778 Female, age 91, both hemispheres 2.6
2111 Female, age 85, right hemisphere 2.5
Nucleus accumbens
nTPM: 3.7
1856 Female, age 91, right hemisphere 4.5
2824 Male, age 61, right hemisphere 4.2
1806 Female, age 85, left hemisphere 4.1
1783 Male, age 74, unknown 4.0
2698 Female, age 72, unknown 3.7
2286 Male, age 75, left hemisphere 3.5
2391 Female, age 94, left hemisphere 3.0
2732 Male, age 80, right hemisphere 2.9
Nucleus basalis of Meynert
nTPM: 3.6
2484 Female, age 94, left hemisphere 4.5
2569 Male, age 61, both hemispheres 3.7
2393 Male, age 80, right hemisphere 3.5
2821 Male, age 75, both hemispheres 2.8
Nucleus of the diagonal band
nTPM: 3.3
2775 Male, age 80, right hemisphere 3.7
1812 Female, age 91, both hemispheres 3.3
2029 Male, age 61, right hemisphere 3.3
2195 Female, age 85, both hemispheres 3.2
1979 Male, age 74, unknown 3.1
Olfactory tubercle
nTPM: 3.0
1846 Male, age 80, right hemisphere 3.2
2856 Male, age 75, right hemisphere 3.2
1998 Female, age 91, both hemispheres 2.9
2487 Female, age 94, left hemisphere 2.9
Putamen
nTPM: 4.0
2466 Female, age 79, unknown 4.8
1838 Male, age 80, right hemisphere 4.7
1829 Male, age 74, unknown 4.6
1937 Female, age 91, right hemisphere 4.1
2482 Female, age 94, left hemisphere 3.5
2647 Male, age 75, left hemisphere 3.3
2489 Female, age 72, unknown 3.0
Septal nuclei
nTPM: 3.0
1960 Male, age 74, unknown 3.3
2009 Female, age 91, both hemispheres 3.3
2394 Male, age 61, left hemisphere 3.3
2031 Female, age 72, unknown 2.9
2059 Female, age 85, both hemispheres 2.9
2629 Female, age 94, right hemisphere 2.9
2199 Male, age 80, right hemisphere 2.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.2
Samples: 246

Max nTPM: 23.7
Min nTPM: 2.4
Std nTPM: 3.5
Median nTPM: 9.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 23.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 21.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 20.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 19.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 18.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 16.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 16.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 15.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 15.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 15.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 15.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.6
Samples: 246

Max nTPM: 19.6
Min nTPM: 1.0
Std nTPM: 2.9
Median nTPM: 8.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 19.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 18.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 17.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 16.2
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 15.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 15.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 15.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 15.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 15.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 14.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 14.1
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Brain - Putamen (basal ganglia)
Average nTPM: 9.2
Samples: 205

Max nTPM: 18.2
Min nTPM: 2.3
Std nTPM: 3.3
Median nTPM: 9.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 18.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 17.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 16.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 16.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 16.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 16.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 16.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 16.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 15.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 15.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 15.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.8
FF:10164-103B2 76 years, female 3.8
Globus pallidus
Scaled Tags Per Million: 2.1
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 1.0
Nucleus accumbens
Scaled Tags Per Million: 3.0
FF:10037-101F1 23-56 years, mixed 3.0
Putamen
Scaled Tags Per Million: 1.6
FF:10176-103C5 60 years, female 1.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.3
Pig sample Sample description nTPM
Caudate
nTPM: 1.7
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.2
Sample A Female 1.8
Sample B Female 1.5
Sample C Male 2.1
Sample D Male 1.2
Putamen
nTPM: 1.8
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.2
Sample A Female 2.5
Sample B Female 1.4
Sample C Male 2.2
Sample D Male 1.2
Septum
nTPM: 2.3
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.8
Sample A Female 1.9
Sample B Female 1.8
Sample C Male 3.3
Sample D Male 2.2
Ventral pallidum
nTPM: 2.1
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 2.3
Sample C Male 3.1
Sample D Male 1.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.6
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.1
Sample A Male 2.4
Sample B Male 3.4
Sample C Female 2.4
Sample D Female 2.1
Septum
nTPM: 3.3
Samples: 4

Max nTPM: 5.1
Min nTPM: 1.7
Sample A Male 3.5
Sample B Male 2.9
Sample C Female 5.1
Sample D Female 1.7
Ventral forebrain
nTPM: 2.5
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.5
Sample A Male 2.8
Sample B Male 1.5
Sample C Female 2.4
Sample D Female 3.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70201331 Antisense, RP_050517_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70201331 Antisense, RP_050517_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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