MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2309.1 nTPM
HPA:2309.1 nTPM
GTEx:1976.8 nTPM
FANTOM5:221.1 Scaled Tags Per Million
Pig:539.1 nTPM
Mouse:775.6 nTPM
Allen mouse:10.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2309.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2273.3
2666 Male, age 74, left hemisphere 2313.2
1870 Female, age 42, unknown 2312.8
2828 Female, age 72, unknown 2302.7
1833 Male, age 53, unknown 2275.9
2586 Male, age 75, left hemisphere 2273.8
1830 Male, age 51, unknown 2265.2
1827 Male, age 72, unknown 2255.2
2411 Female, age 72, unknown 2251.1
2219 Male, age 76, both hemispheres 2247.4
2019 Male, age 18, unknown 2235.8
Dorsal raphe nucleus
nTPM: 2273.8
2016 Female, age 72, unknown 2303.2
2298 Female, age 72, unknown 2289.0
1828 Male, age 53, unknown 2278.8
2750 Male, age 76, both hemispheres 2274.7
2047 Male, age 72, unknown 2223.1
Inferior colliculus
nTPM: 2277.3
2849 Male, age 72, unknown 2299.3
1890 Male, age 53, unknown 2286.6
2097 Female, age 72, unknown 2268.0
1848 Female, age 42, unknown 2255.4
Median raphe nucleus
nTPM: 2261.0
2220 Male, age 76, midline 2261.0
Pedunculopontine tegmental nucleus
nTPM: 2308.3
2338 Male, age 61, both hemispheres 2366.9
2334 Male, age 80, both hemispheres 2322.5
1921 Female, age 85, both hemispheres 2235.5
Periaquaductal grey, anterior
nTPM: 2269.0
2502 Female, age 75, unknown 2312.3
1795 Male, age 51, unknown 2250.4
1947 Male, age 18, unknown 2244.3
Periaquaductal grey, dorsal
nTPM: 2279.3
2850 Male, age 76, both hemispheres 2304.4
1840 Male, age 53, unknown 2291.1
1831 Male, age 72, unknown 2281.3
2464 Female, age 72, unknown 2240.2
Periaquaductal grey, lateral
nTPM: 2268.2
2140 Male, age 76, both hemispheres 2283.2
2053 Male, age 18, unknown 2277.8
2272 Male, age 74, both hemispheres 2243.6
Pretectal area
nTPM: 2260.9
2316 Male, age 76, right hemisphere 2294.9
2825 Male, age 18, unknown 2284.8
1817 Female, age 42, unknown 2267.2
2224 Female, age 72, unknown 2267.0
1815 Male, age 53, unknown 2265.4
2007 Male, age 72, unknown 2258.1
2667 Female, age 75, unknown 2256.4
2407 Male, age 75, both hemispheres 2254.4
1944 Female, age 72, unknown 2245.8
2273 Male, age 74, both hemispheres 2242.7
1816 Male, age 51, unknown 2232.9
Red nucleus
nTPM: 2296.1
2503 Female, age 72, unknown 2366.7
1865 Male, age 51, unknown 2330.2
1904 Male, age 53, unknown 2320.6
1821 Female, age 72, unknown 2318.8
2227 Male, age 72, unknown 2312.7
2769 Male, age 72, unknown 2307.7
2785 Male, age 18, unknown 2271.5
2584 Male, age 75, left hemisphere 2270.9
2725 Female, age 75, unknown 2270.6
1954 Female, age 42, unknown 2267.3
2588 Male, age 74, left hemisphere 2262.2
2823 Male, age 76, right hemisphere 2254.2
Substantia nigra
nTPM: 2309.1
2699 Male, age 18, unknown 2435.6
1851 Male, age 51, unknown 2381.0
2665 Male, age 74, both hemispheres 2367.3
1916 Female, age 42, unknown 2321.9
2409 Female, age 72, unknown 2316.5
1889 Female, age 72, unknown 2286.5
2241 Male, age 72, unknown 2266.0
2590 Female, age 75, unknown 2265.2
1941 Male, age 53, unknown 2235.7
2583 Male, age 75, right hemisphere 2215.5
Superior colliculus
nTPM: 2294.3
2587 Male, age 74, left hemisphere 2362.2
1995 Male, age 72, unknown 2356.8
1913 Female, age 42, unknown 2354.3
2668 Female, age 75, unknown 2314.6
1796 Male, age 53, unknown 2286.7
2664 Male, age 75, both hemispheres 2276.4
1839 Male, age 51, unknown 2272.3
2087 Female, age 72, unknown 2241.5
2261 Male, age 18, unknown 2241.2
1895 Male, age 76, right hemisphere 2237.4
Ventral tegmental area
nTPM: 2307.1
1915 Female, age 42, unknown 2358.1
2223 Female, age 72, unknown 2333.1
2021 Male, age 53, unknown 2319.5
1942 Male, age 51, unknown 2281.7
2410 Female, age 72, unknown 2281.4
2218 Male, age 76, both hemispheres 2269.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1976.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1976.8
Samples: 139

Max nTPM: 6178.9
Min nTPM: 687.2
Std nTPM: 775.6
Median nTPM: 1875.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6178.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4726.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4701.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4579.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3571.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3285.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3148.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3137.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3031.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2929.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2917.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 221.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 221.1
FF:10158-103A5 76 years, female 221.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 539.1
Pig sample Sample description nTPM
Midbrain
nTPM: 502.8
Samples: 4

Max nTPM: 813.1
Min nTPM: 320.7
Sample A Female 813.1
Sample B Female 515.1
Sample C Male 362.3
Sample D Male 320.7
Periaqueductal gray
nTPM: 426.5
Samples: 3

Max nTPM: 470.0
Min nTPM: 393.7
Sample B Female 393.7
Sample C Male 470.0
Sample D Male 415.7
Substantia nigra
nTPM: 539.1
Samples: 4

Max nTPM: 674.1
Min nTPM: 442.2
Sample A Female 674.1
Sample B Female 559.6
Sample C Male 442.2
Sample D Male 480.4
Superior colliculi
nTPM: 538.7
Samples: 4

Max nTPM: 646.3
Min nTPM: 438.2
Sample A Female 646.3
Sample B Female 598.3
Sample C Male 438.2
Sample D Male 472.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 775.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 775.6
Samples: 4

Max nTPM: 858.9
Min nTPM: 705.2
Sample A Male 858.9
Sample B Male 745.2
Sample C Female 705.2
Sample D Female 793.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
100143572 Antisense, RP_110407_01_F09, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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