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RPS11
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  • RPS11
PATHOLOGY STOMACH CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
ANTIBODIES
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Dictionary
Stomach cancer
Human pathology
Stomach cancer
STOMACH CANCER - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

Read more
RPS11 is not prognostic in stomach cancer


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

Read more
: 469.18
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

Read more
: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average FPKM 650.7
Number of samples 354
Samples
Sample Description FPKM
TCGA-KB-A93H-01A 79 years, female, asian, stage:iib, alive, 1145 days 2350.8
TCGA-HU-8244-01A 77 years, female, asian, stage:ia, alive, 742 days 1752.7
TCGA-D7-A74A-01A 61 years, female, white, stage:iiia, alive, 607 days 1656.1
TCGA-D7-5577-01A 53 years, female, white, stage:iiia, dead, 782 days 1647.5
TCGA-BR-7717-01A 63 years, male, white, stage:iv, dead, 552 days 1551.3
TCGA-HU-A4G2-01A 46 years, male, asian, stage:iib, alive, 739 days 1522.9
TCGA-BR-6707-01A 75 years, male, white, stage:iia, alive, 605 days 1516.6
TCGA-CD-5813-01A 60 years, male, asian, stage:ii, dead, 377 days 1431.6
TCGA-HU-A4H5-01A 71 years, male, asian, stage:ib, alive, 724 days 1412.1
TCGA-IN-7808-01A 59 years, male, white, dead, 105 days 1389.2
TCGA-BR-8372-01A 63 years, male, white, stage:iiic, alive, 951 days 1384.2
TCGA-BR-6566-01A 64 years, female, white, stage:iia, alive, 997 days 1382.3
TCGA-IN-7806-01A 50 years, male, white, stage:iib, alive, 1106 days 1353.8
TCGA-BR-8690-01A 54 years, female, white, stage:iiib, alive, 325 days 1350.0
TCGA-BR-8676-01A 59 years, male, white, stage:iiib, alive, 229 days 1295.6
TCGA-BR-8060-01A 75 years, female, white, stage:iib, dead, 348 days 1292.4
TCGA-CG-5722-01A 67 years, female, stage:iv, alive, 30 days 1284.3
TCGA-BR-8487-01A 64 years, female, white, stage:iia, alive, 34 days 1268.3
TCGA-BR-6453-01A 54 years, male, white, stage:iia, alive, 485 days 1223.4
TCGA-CD-5801-01A male, asian, stage:iiia, dead, 401 days 1219.3
TCGA-BR-A4QL-01A 75 years, female, white, stage:iiib, dead, 491 days 1190.3
TCGA-VQ-A8PH-01A 62 years, male, white, stage:iiib, dead, 389 days 1162.8
TCGA-SW-A7EB-01A 45 years, male, white, stage:iiia, alive, 176 days 1160.0
TCGA-BR-4279-01A 44 years, male, white, stage:ii, dead, 291 days 1146.1
TCGA-BR-A4J6-01A 69 years, female, white, stage:iia, alive, 20 days 1142.6
TCGA-BR-7723-01A 59 years, male, white, stage:iiib, dead, 874 days 1119.4
TCGA-HU-8604-01A 82 years, female, asian, stage:iia, alive, 694 days 1110.9
TCGA-KB-A6F7-01A 54 years, female, stage:ib, alive, 1935 days 1106.7
TCGA-CD-8531-01A 66 years, female, asian, stage:iiia, alive, 383 days 1084.4
TCGA-BR-6563-01A 60 years, male, white, stage:iib, alive, 679 days 1076.2
TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:iv, dead, 262 days 1066.8
TCGA-HU-8249-01A 76 years, male, asian, stage:iiia, alive, 881 days 1052.2
TCGA-VQ-A94T-01A 73 years, male, stage:iiib, dead, 342 days 1032.2
TCGA-VQ-A8DV-01A 48 years, male, white, stage:ib, dead, 403 days 1024.3
TCGA-D7-6522-01A 58 years, male, white, stage:ib, alive, 566 days 1009.7
TCGA-D7-A6EX-01A 72 years, female, white, stage:iiia, alive, 86 days 1009.1
TCGA-BR-8059-01A 72 years, male, white, stage:iii, dead, 439 days 1003.6
TCGA-CG-5724-01A 59 years, male, stage:iv, dead, 366 days 986.1
TCGA-BR-7716-01A 62 years, female, white, stage:iib, alive, 1210 days 984.5
TCGA-BR-8361-01A 71 years, female, white, stage:iiic, alive, 946 days 983.1
TCGA-VQ-A91U-01A 78 years, male, asian, stage:iiia, dead, 52 days 976.9
TCGA-SW-A7EA-01A 61 years, female, white, stage:ib, alive, 579 days 969.1
TCGA-BR-A44T-01A 53 years, female, white, stage:iia, alive, 1038 days 961.9
TCGA-VQ-A91D-01A 70 years, male, white, stage:iiic, dead, 356 days 948.6
TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:iii, dead, 185 days 947.9
TCGA-BR-4280-01A 78 years, female, white, stage:iii, dead, 201 days 947.0
TCGA-CG-4438-01A 56 years, male, stage:iv, alive, 1645 days 946.9
TCGA-HU-A4H6-01A 72 years, female, asian, stage:iiia, alive, 644 days 945.5
TCGA-R5-A7ZI-01A 44 years, female, white, stage:iv, alive, 2267 days 942.8
TCGA-BR-7707-01A 69 years, female, white, stage:ib, alive, 1090 days 940.1
TCGA-IN-A6RR-01A 84 years, male, white, dead, 205 days 939.9
TCGA-D7-8570-01A 44 years, male, white, stage:iiib, alive, 752 days 938.1
TCGA-HU-A4GT-01A 71 years, female, asian, stage:iia, alive, 198 days 928.2
TCGA-CG-5726-01A 73 years, male, stage:ia, dead, 881 days 928.0
TCGA-CG-5723-01A 83 years, male, stage:ii, alive, 3196 days 927.8
TCGA-CD-A48C-01A 80 years, female, asian, stage:iib, dead, 353 days 927.4
TCGA-CD-8534-01A 41 years, male, asian, stage:ii, alive, 367 days 922.4
TCGA-HF-7133-01A female, stage:iv, alive, 1918 days 920.3
TCGA-D7-A4YX-01A 63 years, male, white, stage:iib, alive, 1108 days 915.0
TCGA-RD-A7C1-01A 82 years, male, white, stage:ib, dead, 507 days 911.5
TCGA-HJ-7597-01A 71 years, female, white, stage:ib, dead, 805 days 906.7
TCGA-HU-A4GJ-01A 60 years, female, asian, stage:iiic, alive, 650 days 905.8
TCGA-F1-A72C-01A 68 years, male, asian, stage:iia, alive, 346 days 904.9
TCGA-BR-8286-01A 49 years, male, white, stage:ii, alive, 895 days 904.5
TCGA-CG-4437-01A 83 years, male, stage:ii, alive, 245 days 902.0
TCGA-BR-8589-01A 56 years, male, white, stage:iiib, alive, 825 days 900.8
TCGA-CG-4469-01A 70 years, male, stage:iv, dead, 215 days 897.5
TCGA-FP-7735-01A 77 years, male, black or african american, stage:ib, dead, 106 days 897.1
TCGA-IN-A6RL-01A 84 years, male, white, dead, 406 days 896.2
TCGA-CD-A4MG-01A 76 years, male, asian, stage:iia, dead, 200 days 889.4
TCGA-BR-8381-01A 51 years, male, white, stage:iib, alive, 224 days 888.4
TCGA-B7-5818-01A 62 years, male, white, stage:ib, alive, 356 days 881.9
TCGA-RD-A7BS-01A 46 years, male, white, stage:iiia, dead, 336 days 881.5
TCGA-VQ-A94R-01A 63 years, male, white, dead, 1294 days 875.4
TCGA-CD-8525-01A 82 years, female, asian, stage:iiia, alive, 383 days 875.0
TCGA-CD-A487-01A 51 years, male, asian, stage:iib, alive, 374 days 853.7
TCGA-D7-5578-01A 80 years, male, white, stage:iiia, alive, 385 days 853.2
TCGA-CG-4444-01A 76 years, male, stage:iiia, alive, 1431 days 846.8
TCGA-CG-4440-01A 68 years, female, stage:iv, dead, 122 days 844.7
TCGA-BR-7958-01A 60 years, male, white, stage:iiib, alive, 899 days 839.2
TCGA-BR-7704-01A 69 years, female, white, stage:ii, alive, 1072 days 834.9
TCGA-HF-A5NB-01A 75 years, female, stage:iiic, alive, 928 days 831.0
TCGA-HU-A4GQ-01A 71 years, male, asian, stage:iiic, dead, 3 days 825.3
TCGA-3M-AB46-01A male, white, stage:ib, alive, 1765 days 823.9
TCGA-CG-5734-01A 68 years, male, stage:iiia, dead, 243 days 823.4
TCGA-D7-6525-01A 58 years, male, white, stage:iiia, dead, 406 days 818.8
TCGA-IN-A7NR-01A 64 years, female, white, stage:iv, alive, 198 days 809.7
TCGA-BR-8081-01A 71 years, female, white, stage:iib, alive, 981 days 806.3
TCGA-CD-8527-01A 72 years, female, asian, stage:ii, dead, 218 days 806.3
TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:iiic, dead, 640 days 803.6
TCGA-HU-A4H0-01A 72 years, male, asian, stage:iiic, alive, 64 days 800.7
TCGA-BR-7196-01A 64 years, male, white, stage:iv, alive, 666 days 795.7
TCGA-BR-4253-01A 80 years, female, white, stage:iiia, dead, 124 days 795.0
TCGA-BR-6455-01A 59 years, male, white, stage:iib, dead, 422 days 786.7
TCGA-CD-8524-01A 61 years, female, asian, stage:ii, alive, 388 days 785.6
TCGA-F1-6875-01A 80 years, male, black or african american, stage:ia, dead, 2197 days 770.0
TCGA-HU-A4GX-01A 70 years, female, asian, stage:iiic, alive, 616 days 762.8
TCGA-D7-8573-01A 57 years, male, white, stage:iia, alive, 593 days 757.3
TCGA-D7-6521-01A 65 years, male, white, alive, 564 days 744.0
TCGA-BR-8295-01A 60 years, female, white, stage:iib, dead, 67 days 744.0
TCGA-VQ-A8E3-01A 79 years, male, white, stage:iia, dead, 661 days 741.7
TCGA-BR-7722-01A 62 years, male, white, stage:iib, dead, 466 days 740.3
TCGA-D7-6519-01A 64 years, female, white, alive, 625 days 736.5
TCGA-BR-6564-01A 46 years, female, white, stage:iiia, dead, 794 days 734.4
TCGA-BR-6457-01A 69 years, male, white, stage:iia, alive, 416 days 731.1
TCGA-BR-8366-01A 80 years, female, white, stage:iia, alive, 29 days 731.0
TCGA-BR-8680-01A 45 years, male, asian, stage:iv, alive, 972 days 729.7
TCGA-B7-A5TJ-01A 74 years, male, white, stage:iib, alive, 335 days 718.9
TCGA-BR-7715-01A 65 years, male, white, stage:iia, alive, 1023 days 718.2
TCGA-BR-6565-01A 67 years, male, white, stage:iib, dead, 279 days 718.1
TCGA-IN-A6RJ-01A 64 years, male, white, stage:ia, alive, 379 days 718.1
TCGA-CD-8526-01A 73 years, female, asian, stage:iiia, alive, 381 days 716.2
TCGA-VQ-A94U-01A 71 years, male, white, stage:iib, alive, 819 days 709.5
TCGA-CD-5798-01A 83 years, male, asian, stage:ii, alive, 408 days 707.1
TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:iv, dead, 259 days 704.6
TCGA-VQ-A928-01A 49 years, male, white, stage:iv, dead, 174 days 703.6
TCGA-RD-A8MW-01A 72 years, male, white, stage:iiib, dead, 1153 days 699.6
TCGA-CD-A48A-01A 57 years, male, asian, stage:iia, alive, 378 days 699.6
TCGA-VQ-A8PB-01A 65 years, female, white, stage:ii, dead, 1043 days 695.2
TCGA-VQ-A8P3-01A 72 years, male, white, stage:iiia, alive, 1132 days 695.1
TCGA-HU-8238-01A 56 years, male, asian, alive, 46 days 693.7
TCGA-IN-A6RN-01A 72 years, female, white, stage:iia, alive, 594 days 693.4
TCGA-IN-8462-01A 80 years, male, white, stage:iib, alive, 572 days 683.9
TCGA-BR-6705-01A 68 years, female, white, stage:iiib, dead, 779 days 682.5
TCGA-BR-A44U-01A 70 years, male, white, stage:iiib, dead, 422 days 681.1
TCGA-HU-A4G3-01A 54 years, male, asian, stage:iib, alive, 170 days 680.6
TCGA-VQ-A8P2-01A 68 years, male, white, stage:iiia, alive, 1160 days 675.0
TCGA-CD-5803-01A 78 years, female, asian, stage:ii, dead, 341 days 674.7
TCGA-B7-A5TI-01A 52 years, male, white, stage:iiic, alive, 595 days 673.2
TCGA-RD-A7BW-01A 68 years, female, white, stage:ib, dead, 156 days 669.3
TCGA-D7-8575-01A 75 years, male, white, stage:iiia, dead, 554 days 667.0
TCGA-BR-4201-01A 66 years, female, white, dead, 940 days 661.0
TCGA-CD-8535-01A 59 years, male, asian, stage:iiia, alive, 390 days 659.3
TCGA-CG-5721-01A 58 years, male, stage:iv, alive, 183 days 657.5
TCGA-VQ-A8DU-01A 63 years, male, white, stage:iiia, dead, 166 days 650.0
TCGA-D7-8572-01A 57 years, male, white, stage:iib, alive, 511 days 647.8
TCGA-BR-A4J8-01A 71 years, female, white, stage:iiib, alive, 411 days 647.7
TCGA-CG-4306-01A 90 years, male, stage:iv, dead, 31 days 646.3
TCGA-BR-8483-01A 59 years, male, white, stage:iiia, alive, 164 days 645.7
TCGA-BR-4191-01A 72 years, male, white, dead, 558 days 645.1
TCGA-FP-A4BF-01A 68 years, male, white, stage:iiia, dead, 168 days 644.8
TCGA-F1-6177-01A 90 years, male, black or african american, stage:i, dead, 200 days 643.6
TCGA-CG-4436-01A 57 years, male, stage:ib, alive, 243 days 636.8
TCGA-CD-8532-01A 52 years, male, asian, stage:ii, dead, 354 days 634.5
TCGA-D7-8574-01A 72 years, male, white, stage:iiia, alive, 523 days 633.8
TCGA-D7-6822-01A 77 years, male, white, stage:ib, alive, 375 days 630.9
TCGA-BR-6803-01A 54 years, female, white, stage:iia, alive, 949 days 629.8
TCGA-CD-5799-01A 45 years, male, asian, stage:ii, alive, 396 days 628.0
TCGA-CG-4465-01A 69 years, female, stage:iv, dead, 274 days 626.8
TCGA-BR-A4J7-01A 49 years, male, asian, stage:iib, alive, 989 days 625.5
TCGA-BR-6458-01A 57 years, female, white, stage:iib, dead, 588 days 624.4
TCGA-BR-7959-01A 59 years, male, white, stage:iiia, alive, 1010 days 623.1
TCGA-BR-8289-01A 57 years, male, white, stage:iv, dead, 81 days 622.7
TCGA-VQ-A8DT-01A 43 years, male, stage:iiib, alive, 1484 days 622.6
TCGA-BR-8371-01A 62 years, male, white, stage:iiib, dead, 359 days 620.4
TCGA-VQ-A8PJ-01A 53 years, male, stage:iv, dead, 82 days 616.5
TCGA-CG-5720-01A 71 years, male, stage:ib, dead, 30 days 616.0
TCGA-HU-A4GD-01A 56 years, male, asian, stage:iib, alive, 692 days 614.8
TCGA-BR-8588-01A 55 years, female, white, stage:iib, alive, 389 days 613.9
TCGA-BR-8382-01A 67 years, female, white, stage:iiic, dead, 762 days 611.6
TCGA-BR-8368-01A 84 years, female, white, stage:ib, alive, 131 days 607.4
TCGA-BR-8485-01A 68 years, female, white, stage:iiic, alive, 280 days 606.9
TCGA-RD-A8N9-01A 63 years, female, asian, stage:ii, alive, 1083 days 606.6
TCGA-D7-6528-01A 70 years, female, white, stage:ib, alive, 463 days 603.9
TCGA-MX-A5UJ-01A 86 years, female, white, stage:iiia, alive, 600 days 603.7
TCGA-BR-8296-01A 58 years, female, white, stage:iiic, dead, 474 days 603.6
TCGA-VQ-AA6K-01A 60 years, male, white, stage:iiic, dead, 378 days 602.9
TCGA-BR-8284-01A 72 years, female, white, stage:iiic, dead, 245 days 601.8
TCGA-VQ-A8P5-01A 67 years, male, white, stage:iia, dead, 235 days 601.6
TCGA-CD-8528-01A 43 years, female, asian, stage:iiia, alive, 375 days 599.8
TCGA-HU-A4H4-01A 53 years, female, asian, stage:iib, alive, 725 days 596.4
TCGA-BR-8080-01A 72 years, female, white, stage:iiic, dead, 292 days 592.0
TCGA-BR-6801-01A 70 years, male, white, stage:iia, alive, 1223 days 591.3
TCGA-VQ-A8PO-01A 74 years, male, white, stage:iib, dead, 282 days 588.1
TCGA-HU-A4GC-01A 74 years, male, asian, stage:iiib, alive, 99 days 586.2
TCGA-D7-6527-01A 62 years, male, white, stage:ii, dead, 312 days 586.2
TCGA-CG-4475-01A 76 years, male, stage:iib, alive, 699 days 583.8
TCGA-CG-5718-01A 78 years, female, stage:ii, dead, 1095 days 583.6
TCGA-D7-6818-01A 53 years, male, white, stage:iiia, dead, 376 days 583.2
TCGA-D7-6526-01A 67 years, female, white, stage:iiia, alive, 523 days 582.3
TCGA-CD-A4MH-01A 86 years, female, asian, stage:iia, alive, 371 days 581.5
TCGA-BR-8077-01A 58 years, female, white, stage:iiib, alive, 21 days 575.1
TCGA-HU-A4G8-01A 71 years, female, asian, stage:iib, alive, 690 days 574.8
TCGA-BR-6852-01A 64 years, female, white, stage:iia, alive, 1367 days 572.9
TCGA-CD-5804-01A 90 years, male, asian, alive, 368 days 572.7
TCGA-CG-4460-01A 66 years, female, stage:iv, dead, 669 days 570.1
TCGA-CD-A486-01A 68 years, male, asian, stage:iia, dead, 192 days 561.4
TCGA-VQ-A91Z-01A 67 years, female, white, stage:iiia, alive, 1690 days 559.0
TCGA-HF-7132-01A male, stage:ii, alive, 2351 days 558.0
TCGA-D7-A6EY-01A 72 years, female, white, stage:iiib, dead, 348 days 556.3
TCGA-CG-5719-01A 54 years, female, stage:iv, alive, 31 days 554.4
TCGA-RD-A8N6-01A 78 years, female, white, stage:iiia, dead, 272 days 553.4
TCGA-HU-A4HB-01A 68 years, male, asian, stage:iib, dead, 477 days 553.1
TCGA-FP-A9TM-01A 77 years, male, white, alive, 189 days 551.7
TCGA-BR-7901-01A 74 years, male, white, stage:iib, dead, 105 days 551.1
TCGA-FP-8210-01A 48 years, male, asian, stage:iiia, dead, 153 days 550.9
TCGA-BR-4257-01A 79 years, female, white, dead, 294 days 549.5
TCGA-BR-8291-01A 61 years, male, white, stage:iib, dead, 607 days 548.9
TCGA-B7-A5TK-01A 51 years, male, white, stage:iiia, alive, 288 days 548.8
TCGA-BR-8058-01A 53 years, female, white, stage:iiib, alive, 1133 days 548.6
TCGA-CD-8530-01A 52 years, male, asian, stage:ii, alive, 377 days 548.5
TCGA-BR-8686-01A 69 years, male, asian, stage:iiib, dead, 635 days 546.1
TCGA-BR-4187-01A 56 years, male, white, dead, 141 days 544.8
TCGA-VQ-AA6F-01A 58 years, male, white, stage:iib, alive, 1646 days 543.6
TCGA-VQ-A8PU-01A 72 years, female, white, stage:iiia, dead, 832 days 540.7
TCGA-CG-4466-01A 81 years, female, stage:ib, alive, 577 days 539.8
TCGA-D7-A748-01A 41 years, female, white, stage:iv, dead, 132 days 536.9
TCGA-BR-8677-01A 74 years, female, white, stage:iiib, alive, 813 days 535.2
TCGA-D7-6815-01A 70 years, female, white, stage:iib, alive, 486 days 534.4
TCGA-VQ-A924-01A 69 years, male, stage:ii, dead, 1686 days 533.1
TCGA-BR-7197-01A 69 years, male, white, stage:ii, alive, 280 days 532.7
TCGA-IN-A7NU-01A 69 years, male, white, stage:iiib, alive, 356 days 531.8
TCGA-VQ-A923-01A 90 years, male, white, stage:iiia, dead, 61 days 530.2
TCGA-HU-A4G9-01A 67 years, female, asian, stage:ia, alive, 736 days 529.2
TCGA-CD-8533-01A 48 years, male, asian, stage:ii, alive, 468 days 526.7
TCGA-VQ-A8E7-01B 59 years, male, white, stage:iv, alive, 1138 days 521.0
TCGA-VQ-A91V-01A 58 years, male, stage:iiia, alive, 1297 days 520.8
TCGA-VQ-A8PF-01A 77 years, male, stage:iiib, dead, 76 days 520.3
TCGA-EQ-8122-01A 72 years, female, white, stage:iib, dead, 243 days 519.8
TCGA-HU-A4GY-01A 77 years, female, asian, stage:iiia, alive, 8 days 516.9
TCGA-VQ-A925-01A 66 years, male, white, stage:iiia, dead, 138 days 515.0
TCGA-B7-A5TN-01A 60 years, male, white, stage:iib, alive, 287 days 512.1
TCGA-BR-4256-01A 80 years, male, white, dead, 284 days 511.2
TCGA-HF-7134-01A male, stage:ia, alive, 1588 days 507.9
TCGA-D7-A4YU-01A 73 years, male, white, stage:iiib, alive, 500 days 506.3
TCGA-CG-4305-01A 69 years, male, stage:ii, alive, 485 days 505.1
TCGA-RD-A8MV-01A 56 years, male, white, stage:iiib, alive, 3720 days 504.7
TCGA-CD-A489-01A 58 years, male, asian, stage:iia, dead, 344 days 502.3
TCGA-BR-4267-01A 51 years, male, white, stage:ib, dead, 188 days 499.5
TCGA-BR-A4J9-01A 55 years, male, white, stage:iia, alive, 14 days 498.4
TCGA-BR-A4PF-01A 72 years, male, white, stage:iiib, alive, 35 days 496.8
TCGA-VQ-A8PQ-01A 50 years, female, white, stage:iv, dead, 476 days 493.2
TCGA-IN-AB1X-01A 78 years, female, white, stage:iia, alive, 411 days 491.2
TCGA-BR-7957-01A 50 years, female, white, stage:iv, dead, 276 days 490.3
TCGA-VQ-A8PE-01A 78 years, male, white, stage:iiib, dead, 675 days 489.2
TCGA-D7-A6F2-01A 62 years, male, white, stage:ib, alive, 476 days 488.2
TCGA-BR-8380-01A 55 years, male, white, stage:iiic, dead, 21 days 486.5
TCGA-HU-A4H3-01A 56 years, female, asian, stage:iiic, alive, 882 days 485.4
TCGA-VQ-A8PC-01A 65 years, male, white, stage:iiia, dead, 1407 days 483.4
TCGA-D7-A6EZ-01A 66 years, male, white, stage:iiia, dead, 618 days 476.0
TCGA-VQ-A8PM-01A 56 years, male, white, stage:iv, dead, 57 days 474.8
TCGA-BR-8591-01A 79 years, male, white, stage:iiic, alive, 856 days 473.7
TCGA-VQ-AA64-01A 68 years, male, white, stage:iiib, dead, 560 days 472.6
TCGA-D7-8576-01A 54 years, female, white, stage:iiib, dead, 446 days 471.7
TCGA-FP-7916-01A 78 years, male, asian, stage:iiic, dead, 428 days 470.3
TCGA-BR-8365-01A 70 years, female, white, stage:iia, dead, 533 days 469.6
TCGA-VQ-A91A-01A 67 years, male, white, stage:iiib, alive, 1200 days 468.8
TCGA-RD-A8N0-01A 53 years, female, white, stage:iiib, alive, 1236 days 467.9
TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:iiib, alive, 1000 days 465.7
TCGA-CD-5800-01A female, asian, stage:ii, alive, 400 days 465.7
TCGA-BR-8678-01A 76 years, male, white, stage:ib, alive, 754 days 463.5
TCGA-IN-A7NT-01A 73 years, female, white, stage:iib, alive, 323 days 459.2
TCGA-FP-A8CX-01A 60 years, male, white, stage:iiic, alive, 7 days 457.7
TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:iib, alive, 942 days 456.7
TCGA-CG-4441-01A 83 years, male, stage:iiia, dead, 426 days 456.2
TCGA-HU-A4GP-01A 62 years, female, asian, stage:iia, alive, 273 days 453.9
TCGA-D7-A6F0-01A 79 years, female, white, stage:ib, alive, 678 days 452.1
TCGA-BR-6802-01A 65 years, male, white, stage:iiia, alive, 940 days 448.7
TCGA-RD-A8N5-01A 78 years, male, white, stage:iiia, dead, 1747 days 447.2
TCGA-CG-5732-01A 66 years, male, stage:iv, dead, 2100 days 446.4
TCGA-ZQ-A9CR-01A 79 years, female, white, stage:iiic, dead, 24 days 445.0
TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:iiib, alive, 838 days 444.1
TCGA-HU-A4HD-01A 73 years, male, asian, stage:iiia, alive, 1016 days 441.5
TCGA-HU-A4H2-01A 58 years, female, asian, stage:iiib, alive, 394 days 440.8
TCGA-F1-A448-01A 70 years, male, white, stage:iiib, alive, 647 days 438.8
TCGA-D7-6524-01A 53 years, male, white, stage:ii, alive, 543 days 433.6
TCGA-IN-AB1V-01A 63 years, male, white, stage:ia, alive, 479 days 433.5
TCGA-MX-A666-01A 61 years, male, white, stage:iia, alive, 427 days 429.4
TCGA-VQ-A8PP-01A 76 years, male, stage:iv, dead, 712 days 428.9
TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:iv, dead, 396 days 428.3
TCGA-CD-8529-01A 65 years, male, asian, stage:iv, alive, 374 days 427.7
TCGA-VQ-A91X-01A 74 years, male, white, stage:iiib, dead, 289 days 426.7
TCGA-F1-6874-01A 79 years, male, white, stage:ib, alive, 440 days 423.8
TCGA-BR-8369-01A 76 years, female, white, stage:iiib, alive, 427 days 423.7
TCGA-VQ-A91N-01A 59 years, female, stage:iv, dead, 570 days 423.0
TCGA-HU-A4GF-01A 69 years, male, asian, stage:iia, alive, 785 days 422.2
TCGA-BR-8592-01A 63 years, female, white, stage:iiib, dead, 191 days 422.0
TCGA-BR-7851-01A 74 years, male, white, stage:iib, dead, 574 days 421.2
TCGA-VQ-A92D-01A 67 years, male, white, stage:ib, alive, 2032 days 420.9
TCGA-HU-8602-01A 58 years, female, asian, stage:iib, alive, 679 days 420.0
TCGA-FP-8099-01A 79 years, male, white, stage:iia, alive, 519 days 415.4
TCGA-VQ-A91K-01A 69 years, male, white, stage:iiia, alive, 1862 days 414.0
TCGA-CG-4301-01A 75 years, female, stage:iv, alive, 92 days 413.3
TCGA-CG-4477-01A 58 years, female, stage:ib, alive, 942 days 412.8
TCGA-BR-8687-01A 67 years, female, white, stage:iiic, dead, 250 days 412.5
TCGA-BR-8484-01A 61 years, male, white, stage:iiia, dead, 766 days 410.9
TCGA-BR-6452-01A 78 years, female, white, stage:iia, alive, 1055 days 410.5
TCGA-D7-8578-01A 72 years, male, white, stage:ib, alive, 643 days 410.0
TCGA-BR-8367-01A 56 years, male, white, stage:iiib, dead, 801 days 409.8
TCGA-D7-A6EV-01A 71 years, female, white, stage:iib, alive, 342 days 409.5
TCGA-VQ-A8PX-01A 51 years, male, stage:ia, alive, 1964 days 408.8
TCGA-HU-8608-01A 70 years, male, asian, stage:iiib, alive, 641 days 408.5
TCGA-MX-A663-01A 66 years, male, white, stage:iia, dead, 300 days 407.9
TCGA-BR-A4J5-01A 56 years, male, asian, stage:iiia, alive, 862 days 407.5
TCGA-VQ-AA68-01A 52 years, female, white, stage:iiic, alive, 1328 days 404.1
TCGA-BR-A4CS-01A 77 years, male, white, stage:iiic, dead, 45 days 403.1
TCGA-HU-A4H8-01A 77 years, male, asian, stage:ib, alive, 428 days 400.8
TCGA-BR-6709-01A 57 years, female, white, stage:iiib, dead, 370 days 399.8
TCGA-RD-A8N1-01A 70 years, male, white, stage:iiib, alive, 3519 days 396.5
TCGA-BR-6456-01A 74 years, female, white, stage:iib, dead, 526 days 396.5
TCGA-IN-A6RI-01A 45 years, male, white, stage:i, alive, 559 days 392.6
TCGA-BR-8364-01A 42 years, female, white, stage:iiic, alive, 675 days 390.8
TCGA-BR-8590-01A 62 years, male, white, stage:iiic, dead, 284 days 387.2
TCGA-VQ-A8PD-01A 69 years, male, white, stage:iiic, dead, 496 days 385.3
TCGA-D7-A747-01A 57 years, male, white, stage:iib, dead, 255 days 383.5
TCGA-R5-A7O7-01A 52 years, male, white, stage:iv, alive, 1389 days 380.7
TCGA-CG-5717-01A 58 years, male, stage:ii, dead, 212 days 379.3
TCGA-FP-7998-01A 77 years, male, white, stage:iiic, alive, 678 days 377.3
TCGA-MX-A5UG-01A 78 years, male, asian, stage:iiia, dead, 113 days 377.1
TCGA-FP-7829-01A 69 years, male, white, stage:iib, alive, 594 days 376.9
TCGA-RD-A8NB-01A 80 years, female, white, stage:iiia, dead, 513 days 376.0
TCGA-VQ-A91Y-01A 67 years, male, white, stage:iiic, dead, 296 days 375.8
TCGA-BR-A4IV-01A 47 years, male, asian, stage:iiib, dead, 869 days 374.4
TCGA-KB-A93J-01A 78 years, male, white, stage:ii, alive, 1124 days 364.7
TCGA-BR-8297-01A 58 years, male, white, stage:iiic, alive, 225 days 363.9
TCGA-BR-A4J4-01A 39 years, male, asian, stage:iiib, alive, 16 days 360.7
TCGA-BR-6710-01A 41 years, male, white, stage:ib, alive, 273 days 360.7
TCGA-VQ-A94P-01A 57 years, male, white, dead, 81 days 360.7
TCGA-D7-A4Z0-01A 60 years, female, white, stage:iib, alive, 449 days 360.6
TCGA-CG-5725-01A 72 years, male, stage:ib, dead, 457 days 353.9
TCGA-IN-A6RS-01A 76 years, male, white, stage:ia, alive, 383 days 353.3
TCGA-VQ-A91E-01A 67 years, female, white, stage:iiib, alive, 664 days 346.6
TCGA-FP-8211-01A 62 years, male, white, stage:iib, alive, 413 days 345.4
TCGA-FP-8209-01A 49 years, male, white, stage:ib, dead, 1811 days 344.9
TCGA-BR-8682-01A 52 years, male, asian, stage:iib, alive, 991 days 338.6
TCGA-HU-8610-01A 75 years, male, asian, stage:ia, alive, 23 days 337.0
TCGA-D7-6520-01A 53 years, male, white, stage:iiia, alive, 573 days 335.1
TCGA-VQ-A927-01A 81 years, male, white, stage:iiib, dead, 200 days 334.2
TCGA-VQ-A8E2-01A 57 years, male, asian, stage:iiib, alive, 1319 days 328.0
TCGA-VQ-A91Q-01A 61 years, male, stage:iv, dead, 633 days 322.5
TCGA-VQ-AA69-01A 35 years, male, white, stage:iiia, alive, 864 days 321.1
TCGA-R5-A7ZE-01B 66 years, female, white, stage:iiia, dead, 554 days 319.9
TCGA-HU-A4GU-01A 74 years, male, asian, stage:iib, alive, 200 days 318.9
TCGA-HU-A4GH-01A 75 years, male, asian, stage:ia, alive, 358 days 318.5
TCGA-IP-7968-01A 74 years, male, white, stage:iiib, alive, 77 days 313.7
TCGA-BR-8384-01A 69 years, male, white, stage:iiic, alive, 113 days 311.0
TCGA-VQ-A922-01A 70 years, male, stage:iv, dead, 275 days 308.6
TCGA-ZA-A8F6-01A 71 years, male, white, stage:ib, alive, 525 days 307.4
TCGA-VQ-AA6D-01A 52 years, female, stage:iiia, alive, 521 days 290.1
TCGA-BR-8486-01A 90 years, female, white, stage:ia, alive, 615 days 287.5
TCGA-D7-8579-01A 66 years, female, white, stage:iib, alive, 636 days 286.9
TCGA-FP-8631-01A 68 years, male, white, stage:iiia, alive, 17 days 279.6
TCGA-BR-8683-01A 75 years, male, asian, stage:iiib, dead, 300 days 266.2
TCGA-CG-4443-01A 68 years, male, stage:ia, alive, 912 days 261.3
TCGA-VQ-AA6A-01A 56 years, male, white, stage:iiic, alive, 1184 days 260.8
TCGA-RD-A8N4-01A 58 years, female, white, stage:iiia, alive, 2171 days 257.0
TCGA-IN-8663-01A 68 years, male, white, stage:iib, dead, 103 days 255.9
TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:iiia, dead, 562 days 249.7
TCGA-RD-A8N2-01A 59 years, female, white, stage:ib, alive, 3540 days 248.9
TCGA-R5-A805-01A 71 years, male, white, stage:iiib, dead, 281 days 240.1
TCGA-KB-A93G-01A 68 years, male, white, stage:ib, alive, 613 days 218.4
TCGA-VQ-A8PK-01A 58 years, male, white, stage:iiib, dead, 543 days 216.5
TCGA-VQ-AA6G-01A 68 years, male, white, stage:iia, dead, 792 days 200.3
TCGA-BR-8373-01A 65 years, female, white, stage:iiia, alive, 450 days 185.7
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STOMACH CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more

Antibody HPA049719
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Click images for details

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.