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RPL13A
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  • RPL13A
PATHOLOGY OVARIAN CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
ANTIBODIES
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VALIDATION
Dictionary
Ovarian cancer
Human pathology
Ovarian cancer
OVARIAN CANCER - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

Read more
RPL13A is not prognostic in ovarian cancer


Stage:
Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

Read more
: 745.57
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

Read more
: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average FPKM 1026.3
Number of samples 373
Samples
Sample Description FPKM
TCGA-24-1431-01A 67 years, female, white, dead, 567 days 3957.8
TCGA-23-1113-01A 48 years, female, white, dead, 949 days 3075.6
TCGA-29-1777-01A 47 years, female, white, alive, 374 days 3056.7
TCGA-09-0367-01A 67 years, female, native hawaiian or other pacific islander, dead, 547 days 2962.8
TCGA-61-2110-01A 56 years, female, white, dead, 1354 days 2656.6
TCGA-29-1761-01A 80 years, female, asian, dead, 528 days 2611.8
TCGA-24-2033-01A 87 years, female, white, dead, 562 days 2601.0
TCGA-61-2008-01A 40 years, female, asian, alive, 932 days 2464.5
TCGA-29-1701-01A 56 years, female, white, dead, 515 days 2433.6
TCGA-04-1343-01A 72 years, female, white, dead, 361 days 2426.3
TCGA-30-1892-01A 52 years, female, white, dead, 1484 days 2424.7
TCGA-09-1659-01B 51 years, female, white, dead, 304 days 2344.7
TCGA-24-1553-01A 53 years, female, white, dead, 1767 days 2339.0
TCGA-61-1721-01A 38 years, female, white, alive, 338 days 2299.0
TCGA-13-0885-01A 70 years, female, white, alive, 3388 days 2242.7
TCGA-04-1347-01A 81 years, female, white, alive, 1919 days 2178.9
TCGA-10-0938-01A 80 years, female, white, dead, 636 days 2142.8
TCGA-25-1634-01A 76 years, female, white, dead, 1091 days 2116.4
TCGA-24-2038-01A 68 years, female, white, dead, 1354 days 2094.3
TCGA-24-1562-01A 67 years, female, white, dead, 1384 days 2065.9
TCGA-61-2092-01A 57 years, female, white, alive, 1573 days 2059.6
TCGA-10-0931-01A 44 years, female, white, dead, 1000 days 2039.8
TCGA-24-1471-01A 60 years, female, white, alive, 36 days 2033.9
TCGA-23-1022-01A 67 years, female, white, dead, 1511 days 1995.2
TCGA-25-1317-01A 66 years, female, white, dead, 61 days 1977.0
TCGA-13-0923-01A 74 years, female, white, alive, 2547 days 1961.4
TCGA-13-0727-01A 71 years, female, white, dead, 462 days 1876.8
TCGA-30-1853-01A 58 years, female, white, dead, 1103 days 1875.8
TCGA-23-1111-01A 63 years, female, white, alive, 98 days 1862.8
TCGA-13-1409-01A 73 years, female, white, dead, 1742 days 1851.5
TCGA-13-0901-01B 42 years, female, asian, alive, 589 days 1821.0
TCGA-04-1341-01A 85 years, female, white, alive, 33 days 1818.0
TCGA-09-1670-01A 57 years, female, white, alive, 547 days 1814.1
TCGA-24-1923-01A 51 years, female, white, dead, 690 days 1803.6
TCGA-29-1696-01A 43 years, female, white, dead, 1032 days 1800.5
TCGA-04-1350-01A 46 years, female, white, dead, 1946 days 1798.7
TCGA-10-0927-01A 65 years, female, dead, 2490 days 1791.0
TCGA-29-1690-01A 66 years, female, white, dead, 1448 days 1774.9
TCGA-13-0795-01A 66 years, female, white, dead, 619 days 1767.5
TCGA-23-1027-01A 48 years, female, white, dead, 976 days 1760.9
TCGA-29-1693-01A 72 years, female, white, alive, 3096 days 1759.1
TCGA-04-1332-01A 70 years, female, white, dead, 1247 days 1668.0
TCGA-13-1507-01A 77 years, female, white, dead, 1993 days 1662.9
TCGA-24-0966-01A 78 years, female, black or african american, alive, 232 days 1661.5
TCGA-23-1024-01A 52 years, female, white, alive, 468 days 1650.4
TCGA-29-2425-01A 60 years, female, white, alive, 1977 days 1649.2
TCGA-25-1630-01A 73 years, female, white, dead, 1162 days 1644.6
TCGA-09-0364-01A 80 years, female, white, dead, 887 days 1619.9
TCGA-25-2393-01A 81 years, female, white, dead, 1157 days 1601.7
TCGA-29-1770-01A 54 years, female, white, alive, 741 days 1589.4
TCGA-25-1877-01A 81 years, female, white, dead, 730 days 1586.0
TCGA-13-0924-01A 45 years, female, white, alive, 2614 days 1570.5
TCGA-24-1845-01A 42 years, female, white, alive, 116 days 1567.5
TCGA-23-1028-01A 43 years, female, white, alive, 1503 days 1566.7
TCGA-13-1477-01A 49 years, female, white, dead, 1662 days 1550.7
TCGA-30-1862-01A 65 years, female, white, dead, 186 days 1530.4
TCGA-09-1669-01A 54 years, female, white, alive, 928 days 1525.1
TCGA-29-1776-01A 63 years, female, black or african american, alive, 360 days 1521.4
TCGA-09-2056-01B 62 years, female, white, alive, 379 days 1509.7
TCGA-29-2414-01A 75 years, female, white, dead, 2621 days 1507.6
TCGA-13-0724-01A 72 years, female, white, dead, 83 days 1501.4
TCGA-29-1769-01A 40 years, female, white, alive, 699 days 1495.8
TCGA-61-1914-01A 65 years, female, alive, 1722 days 1491.4
TCGA-59-2363-01A female, asian, alive, 165 days 1479.4
TCGA-25-1328-01A 38 years, female, white, dead, 2009 days 1470.0
TCGA-29-1774-01A 82 years, female, white, alive, 527 days 1464.6
TCGA-13-1410-01A 57 years, female, white, alive, 2464 days 1448.9
TCGA-29-1766-01A 74 years, female, white, dead, 1199 days 1425.3
TCGA-WR-A838-01A 72 years, female, black or african american, dead, 304 days 1423.7
TCGA-25-1316-01A 55 years, female, white, dead, 1279 days 1419.4
TCGA-25-1329-01A 76 years, female, white, dead, 457 days 1407.5
TCGA-57-1583-01A 57 years, female, black or african american, dead, 346 days 1401.4
TCGA-09-1666-01A 57 years, female, white, alive, 1752 days 1377.3
TCGA-59-2351-01A female, white, alive, 3532 days 1369.0
TCGA-23-1021-01B 45 years, female, white, dead, 1446 days 1364.1
TCGA-23-1107-01A 59 years, female, white, dead, 9 days 1361.1
TCGA-13-0887-01A 42 years, female, white, dead, 2028 days 1356.8
TCGA-61-2009-01A 65 years, female, white, alive, 1212 days 1353.0
TCGA-13-0804-01A 74 years, female, white, dead, 1073 days 1349.7
TCGA-13-0884-01B 39 years, female, white, dead, 3260 days 1345.1
TCGA-04-1651-01A 53 years, female, white, dead, 1102 days 1344.7
TCGA-36-1568-01A 52 years, female, alive, 875 days 1340.7
TCGA-61-1725-01A 40 years, female, white, alive, 956 days 1330.8
TCGA-13-1509-01A 64 years, female, white, alive, 2438 days 1326.6
TCGA-29-1784-01A 55 years, female, white, alive, 163 days 1325.7
TCGA-13-1408-01A 59 years, female, white, dead, 1680 days 1323.7
TCGA-23-1116-01A 83 years, female, white, dead, 592 days 1321.0
TCGA-24-1464-01A 70 years, female, white, dead, 379 days 1318.8
TCGA-13-1407-01A 51 years, female, white, alive, 2534 days 1306.8
TCGA-30-1891-01A 61 years, female, white, dead, 914 days 1302.5
TCGA-61-1998-01A 48 years, female, white, alive, 168 days 1299.4
TCGA-61-2101-01A 55 years, female, white, dead, 1688 days 1290.5
TCGA-24-1416-01A 34 years, female, white, alive, 194 days 1288.8
TCGA-09-1662-01A 58 years, female, white, dead, 2717 days 1288.7
TCGA-13-0920-01A 65 years, female, white, dead, 1484 days 1275.6
TCGA-25-1631-01A 73 years, female, white, dead, 9 days 1264.1
TCGA-29-1783-01A 58 years, female, white, alive, 220 days 1261.9
TCGA-23-1109-01A 63 years, female, white, dead, 1562 days 1253.7
TCGA-24-2020-01A 67 years, female, white, dead, 4624 days 1246.3
TCGA-13-0883-01A 61 years, female, white, dead, 2097 days 1240.8
TCGA-13-0766-01A 42 years, female, white, dead, 1725 days 1233.4
TCGA-61-1910-01A 56 years, female, white, alive, 1127 days 1231.0
TCGA-61-1919-01A 58 years, female, white, dead, 1161 days 1230.5
TCGA-61-1736-01B 45 years, female, white, dead, 1484 days 1230.0
TCGA-29-1703-01A 56 years, female, black or african american, dead, 1815 days 1213.8
TCGA-25-1312-01A 69 years, female, white, dead, 31 days 1208.4
TCGA-20-0991-01A 78 years, female, white, alive, 797 days 1205.5
TCGA-29-1768-01A 50 years, female, white, dead, 952 days 1205.0
TCGA-61-1911-01A 55 years, female, white, alive, 1293 days 1204.0
TCGA-25-1323-01A 72 years, female, white, dead, 395 days 1199.2
TCGA-24-1544-01A 71 years, female, black or african american, dead, 820 days 1195.5
TCGA-13-1505-01A 63 years, female, white, alive, 1998 days 1185.1
TCGA-13-0888-01A 78 years, female, white, dead, 2811 days 1181.8
TCGA-20-1687-01A 46 years, female, white, alive, 81 days 1181.0
TCGA-13-0725-01A 44 years, female, white, dead, 377 days 1179.4
TCGA-25-2391-01A 57 years, female, white, dead, 1492 days 1176.0
TCGA-10-0937-01A 44 years, female, white, dead, 608 days 1174.8
TCGA-25-1315-01A 50 years, female, white, dead, 1583 days 1172.8
TCGA-30-1718-01A 44 years, female, white, dead, 1579 days 1171.1
TCGA-13-0765-01A 50 years, female, white, dead, 1389 days 1170.6
TCGA-29-2428-01A 58 years, female, white, alive, 1372 days 1170.5
TCGA-61-2109-01A 40 years, female, white, dead, 629 days 1167.3
TCGA-25-1320-01A 65 years, female, white, dead, 1155 days 1167.0
TCGA-09-1661-01B 75 years, female, white, dead, 1169 days 1155.5
TCGA-24-1924-01A 65 years, female, white, dead, 919 days 1153.0
TCGA-09-2048-01A 63 years, female, white, dead, 138 days 1145.6
TCGA-23-1110-01A 42 years, female, white, alive, 1658 days 1126.0
TCGA-36-1569-01A 52 years, female, white, alive, 885 days 1117.7
TCGA-24-1604-01A 67 years, female, white, dead, 2688 days 1117.2
TCGA-23-1118-01A 45 years, female, white, alive, 2616 days 1116.3
TCGA-24-2267-01A 58 years, female, white, dead, 1446 days 1111.6
TCGA-29-1781-01A 69 years, female, white, alive, 255 days 1111.1
TCGA-25-1870-01A 59 years, female, white, dead, 455 days 1104.7
TCGA-04-1542-01A 52 years, female, white, dead, 2561 days 1103.9
TCGA-23-1029-01B 46 years, female, white, alive, 268 days 1102.4
TCGA-13-1487-01A 74 years, female, white, dead, 681 days 1101.1
TCGA-24-1842-01A 49 years, female, white, alive, 253 days 1100.4
TCGA-24-0970-01B 63 years, female, white, dead, 354 days 1091.7
TCGA-04-1655-01A 49 years, female, white, dead, 1380 days 1090.0
TCGA-24-1563-01A 66 years, female, black or african american, dead, 1451 days 1088.3
TCGA-13-0891-01A 73 years, female, white, dead, 3128 days 1085.2
TCGA-09-2044-01B 77 years, female, asian, alive, 186 days 1082.5
TCGA-29-1778-01A 77 years, female, white, alive, 454 days 1080.1
TCGA-59-2355-01A female, white, dead, 65 days 1072.4
TCGA-13-0720-01A 48 years, female, white, dead, 1355 days 1062.0
TCGA-59-2352-01A female, white, dead, 286 days 1057.3
TCGA-59-2350-01A female, dead, 679 days 1051.9
TCGA-24-1560-01A 51 years, female, white, dead, 1341 days 1048.6
TCGA-23-1120-01A 60 years, female, white, alive, 130 days 1045.7
TCGA-24-2288-01A 70 years, female, white, dead, 25 days 1045.3
TCGA-13-A5FT-01A 67 years, female, black or african american, alive, 2143 days 1040.8
TCGA-25-2401-01A 64 years, female, white, dead, 90 days 1033.8
TCGA-24-2290-01A 56 years, female, white, dead, 1102 days 1032.2
TCGA-57-1582-01A female, white, dead, 731 days 1029.8
TCGA-VG-A8LO-01A 55 years, female, black or african american, dead, 24 days 1027.9
TCGA-29-1762-01A 59 years, female, white, dead, 2634 days 1005.5
TCGA-24-1428-01A 50 years, female, white, alive, 529 days 997.3
TCGA-61-1728-01A 59 years, female, white, alive, 848 days 991.6
TCGA-24-1551-01A 53 years, female, white, dead, 1579 days 986.9
TCGA-57-1586-01A 66 years, female, white, alive, 679 days 980.1
TCGA-24-0982-01A 77 years, female, white, dead, 679 days 979.7
TCGA-24-1419-01A 62 years, female, white, alive, 239 days 973.6
TCGA-13-0714-01A 55 years, female, white, dead, 189 days 967.1
TCGA-23-1023-01A 65 years, female, white, alive, 1233 days 963.2
TCGA-29-1785-01A 55 years, female, white, dead, 1104 days 958.2
TCGA-61-1737-01A 42 years, female, white, alive, 1364 days 954.9
TCGA-13-1489-01A 70 years, female, white, dead, 2553 days 946.5
TCGA-13-0906-01A 50 years, female, white, alive, 3619 days 944.4
TCGA-13-1404-01A 48 years, female, white, alive, 2469 days 944.3
TCGA-61-1907-01A 63 years, female, white, alive, 952 days 937.5
TCGA-57-1585-01A 57 years, female, white, dead, 53 days 932.7
TCGA-24-1430-01A 68 years, female, white, dead, 863 days 932.1
TCGA-13-1495-01A 60 years, female, white, dead, 2749 days 928.7
TCGA-24-1427-01A 58 years, female, alive, 147 days 927.5
TCGA-25-2396-01A 71 years, female, white, dead, 92 days 926.8
TCGA-61-1738-01A 60 years, female, black or african american, dead, 1089 days 922.2
TCGA-24-2023-01A 54 years, female, white, dead, 1364 days 920.1
TCGA-24-1550-01A 49 years, female, white, dead, 1249 days 919.4
TCGA-10-0928-01A 71 years, female, white, dead, 563 days 917.7
TCGA-24-1418-01A 68 years, female, white, alive, 243 days 913.4
TCGA-36-1580-01A 82 years, female, dead, 737 days 912.3
TCGA-20-1686-01A 75 years, female, white, alive, 89 days 904.7
TCGA-13-0762-01A 65 years, female, white, alive, 3400 days 904.3
TCGA-24-2281-01A 68 years, female, white, alive, 1357 days 904.0
TCGA-24-1417-01A 54 years, female, white, alive, 238 days 901.9
TCGA-24-1103-01A 50 years, female, black or african american, dead, 1646 days 898.9
TCGA-29-1688-01A 39 years, female, white, dead, 2400 days 895.8
TCGA-24-1616-01A 56 years, female, white, dead, 1163 days 890.3
TCGA-24-2280-01A 74 years, female, white, alive, 2143 days 888.9
TCGA-24-2035-01A 65 years, female, white, dead, 857 days 888.3
TCGA-23-1119-01A 64 years, female, white, alive, 3953 days 885.4
TCGA-25-1318-01A 54 years, female, white, dead, 1064 days 883.9
TCGA-24-0979-01A 53 years, female, white, dead, 1264 days 881.6
TCGA-24-2024-01A 72 years, female, black or african american, dead, 1769 days 880.0
TCGA-23-1026-01B 45 years, female, white, alive, 816 days 879.7
TCGA-24-1426-01A 43 years, female, white, alive, 163 days 876.2
TCGA-24-0968-01A 59 years, female, white, dead, 598 days 866.4
TCGA-24-1565-01A 74 years, female, white, dead, 312 days 866.2
TCGA-30-1861-01A 74 years, female, white, dead, 1058 days 860.7
TCGA-24-1546-01A 46 years, female, white, dead, 1955 days 858.5
TCGA-13-1492-01A 66 years, female, white, dead, 3819 days 858.1
TCGA-13-1510-01A 62 years, female, white, dead, 1359 days 850.0
TCGA-36-1570-01A 49 years, female, white, alive, 655 days 848.3
TCGA-61-1733-01A 71 years, female, white, alive, 967 days 846.0
TCGA-24-1930-01A 53 years, female, white, dead, 2467 days 844.2
TCGA-24-1413-01A 51 years, female, white, alive, 192 days 839.4
TCGA-24-1567-01A 54 years, female, white, dead, 524 days 838.4
TCGA-61-1900-01A 51 years, female, black or african american, alive, 176 days 830.3
TCGA-04-1519-01A 48 years, female, alive, 24 days 828.3
TCGA-24-1104-01A 56 years, female, white, dead, 1933 days 824.9
TCGA-61-1918-01A 45 years, female, white, dead, 479 days 824.8
TCGA-04-1338-01A 78 years, female, white, alive, 1418 days 822.2
TCGA-24-2261-01A 76 years, female, white, dead, 24 days 821.0
TCGA-09-2053-01C 72 years, female, white, alive, 1209 days 820.7
TCGA-24-1846-01A 45 years, female, alive, 133 days 820.3
TCGA-13-1498-01A 73 years, female, white, dead, 2012 days 818.2
TCGA-24-1422-01A 82 years, female, black or african american, dead, 23 days 816.3
TCGA-30-1860-01A 58 years, female, white, dead, 1366 days 815.6
TCGA-24-1850-01A 72 years, female, white, alive, 168 days 811.7
TCGA-61-2097-01A 71 years, female, white, alive, 1844 days 805.3
TCGA-23-1030-01A 64 years, female, white, alive, 886 days 802.2
TCGA-13-0730-01A 71 years, female, white, dead, 542 days 793.0
TCGA-24-1552-01A 77 years, female, white, dead, 1259 days 792.1
TCGA-29-1695-01A 62 years, female, white, dead, 1229 days 789.2
TCGA-30-1866-01A 61 years, female, white, dead, 1114 days 785.7
TCGA-13-1483-01A 61 years, female, white, dead, 895 days 784.4
TCGA-61-2012-01A 81 years, female, white, alive, 932 days 776.1
TCGA-09-0369-01A 56 years, female, white, dead, 1082 days 771.2
TCGA-30-1714-01A 68 years, female, white, dead, 1158 days 769.4
TCGA-23-1122-01A 53 years, female, white, dead, 1189 days 766.6
TCGA-25-1633-01A 64 years, female, white, dead, 1891 days 763.3
TCGA-36-1577-01A 43 years, female, asian, alive, 783 days 761.5
TCGA-61-2002-01A 46 years, female, white, alive, 547 days 760.0
TCGA-13-1506-01A 45 years, female, white, dead, 1039 days 759.2
TCGA-25-1632-01A 68 years, female, white, dead, 1799 days 756.2
TCGA-36-1571-01A 53 years, female, white, dead, 695 days 754.1
TCGA-25-1313-01A 62 years, female, white, dead, 820 days 746.5
TCGA-13-1499-01A 56 years, female, white, alive, 3500 days 744.7
TCGA-13-1512-01A 49 years, female, white, alive, 442 days 744.0
TCGA-24-1467-01A 51 years, female, white, dead, 3224 days 740.2
TCGA-04-1361-01A 57 years, female, white, alive, 989 days 740.2
TCGA-04-1364-01A 61 years, female, white, dead, 1024 days 740.1
TCGA-61-1995-01A 43 years, female, white, alive, 61 days 738.7
TCGA-61-1724-01A 47 years, female, white, dead, 637 days 738.5
TCGA-25-1627-01A 73 years, female, white, dead, 394 days 736.3
TCGA-31-1944-01A 47 years, female, white, alive, 1386 days 732.4
TCGA-13-1485-01A 48 years, female, white, dead, 629 days 728.5
TCGA-24-1105-01A 36 years, female, white, dead, 1442 days 723.9
TCGA-23-2077-01A 45 years, female, white, alive, 3525 days 720.0
TCGA-24-2026-01A 79 years, female, white, dead, 1059 days 718.5
TCGA-61-2000-01A 67 years, female, white, alive, 441 days 713.9
TCGA-23-2084-01A 45 years, female, white, dead, 1516 days 711.4
TCGA-31-1956-01A 60 years, female, white, alive, 1342 days 706.4
TCGA-25-1321-01A 65 years, female, white, dead, 1033 days 703.9
TCGA-61-2098-01A 62 years, female, white, alive, 1993 days 701.8
TCGA-09-2045-01A 50 years, female, asian, dead, 1069 days 700.9
TCGA-61-1741-01A 76 years, female, white, dead, 1024 days 699.3
TCGA-24-1434-01A 59 years, female, white, dead, 568 days 693.7
TCGA-25-2404-01A 38 years, female, american indian or alaska native, dead, 883 days 692.4
TCGA-13-1488-01A 59 years, female, white, dead, 2154 days 692.2
TCGA-29-1763-01A 43 years, female, black or african american, alive, 2032 days 685.1
TCGA-13-0900-01B 59 years, female, white, alive, 4077 days 683.5
TCGA-25-2042-01A 60 years, female, american indian or alaska native, dead, 396 days 679.5
TCGA-31-1959-01A 49 years, female, white, alive, 67 days 675.1
TCGA-29-1694-01A 45 years, female, white, dead, 1187 days 673.7
TCGA-13-2060-01A 51 years, female, white, alive, 2369 days 673.0
TCGA-24-1844-01A 64 years, female, white, alive, 113 days 672.6
TCGA-59-2354-01A female, white, dead, 1046 days 672.5
TCGA-23-1809-01A 63 years, female, white, alive, 16 days 671.9
TCGA-24-2271-01A 55 years, female, asian, dead, 962 days 669.8
TCGA-13-0905-01B 51 years, female, white, alive, 3746 days 665.2
TCGA-25-1623-01A 71 years, female, white, dead, 565 days 663.2
TCGA-20-1682-01A 56 years, female, white, alive, 837 days 660.5
TCGA-13-0911-01A 55 years, female, white, dead, 1355 days 658.0
TCGA-13-1411-01A 81 years, female, white, dead, 531 days 656.9
TCGA-25-1326-01A 61 years, female, white, dead, 1249 days 656.1
TCGA-29-1705-01A 48 years, female, white, dead, 555 days 648.5
TCGA-13-1405-01A 49 years, female, white, dead, 868 days 645.5
TCGA-20-1683-01A 65 years, female, white, alive, 772 days 642.0
TCGA-24-1843-01A 67 years, female, white, alive, 106 days 641.7
TCGA-25-2398-01A 71 years, female, white, dead, 1369 days 636.1
TCGA-09-1667-01C 61 years, female, white, alive, 1882 days 633.6
TCGA-24-2027-01A 51 years, female, white, dead, 3337 days 633.0
TCGA-13-0893-01B 48 years, female, black or african american, dead, 1319 days 631.4
TCGA-09-1673-01A 50 years, female, white, alive, 92 days 629.6
TCGA-04-1356-01A 62 years, female, white, dead, 1499 days 626.9
TCGA-09-2054-01A 58 years, female, black or african american, dead, 637 days 625.8
TCGA-25-1322-01A 62 years, female, white, dead, 91 days 615.8
TCGA-25-2400-01A 76 years, female, white, dead, 1278 days 612.5
TCGA-04-1514-01A 45 years, female, white, dead, 1720 days 610.7
TCGA-61-2104-01A 53 years, female, white, alive, 2338 days 610.4
TCGA-13-0800-01A 52 years, female, white, alive, 2661 days 608.1
TCGA-29-2427-01A 60 years, female, white, alive, 1900 days 607.6
TCGA-25-1626-01A 65 years, female, white, dead, 518 days 606.2
TCGA-13-0886-01A 67 years, female, white, alive, 4665 days 605.7
TCGA-24-1928-01A 77 years, female, white, dead, 336 days 598.8
TCGA-13-1501-01A 50 years, female, white, dead, 1314 days 594.7
TCGA-31-1951-01A 58 years, female, white, alive, 684 days 591.5
TCGA-24-1469-01A 71 years, female, white, alive, 277 days 587.5
TCGA-57-1584-01A 47 years, female, white, alive, 643 days 580.9
TCGA-31-1953-01A 52 years, female, asian, alive, 204 days 579.5
TCGA-24-2297-01A 56 years, female, white, dead, 1699 days 574.6
TCGA-04-1362-01A 59 years, female, white, dead, 1348 days 573.1
TCGA-04-1331-01A 79 years, female, white, dead, 1336 days 571.8
TCGA-23-1114-01B 55 years, female, white, dead, 2089 days 570.5
TCGA-10-0936-01A 69 years, female, black or african american, dead, 1123 days 568.7
TCGA-57-1993-01A 56 years, female, white, alive, 763 days 563.5
TCGA-24-1424-01A 67 years, female, white, alive, 183 days 559.3
TCGA-59-A5PD-01A 55 years, female, black or african american, dead, 624 days 558.4
TCGA-10-0933-01A 77 years, female, white, dead, 446 days 549.5
TCGA-13-0797-01A 49 years, female, white, alive, 2121 days 549.4
TCGA-59-2348-01A female, white, alive, 5481 days 547.9
TCGA-29-1711-01A 45 years, female, black or african american, alive, 1053 days 542.6
TCGA-25-2409-01A 71 years, female, white, dead, 821 days 540.5
TCGA-13-1497-01A 48 years, female, white, alive, 3871 days 539.6
TCGA-5X-AA5U-01A 61 years, female, black or african american, alive, 361 days 535.4
TCGA-24-2298-01A 56 years, female, white, dead, 1620 days 532.6
TCGA-20-0987-01A 61 years, female, white, dead, 701 days 526.8
TCGA-13-0726-01A 55 years, female, white, dead, 949 days 525.5
TCGA-36-1576-01A 76 years, female, alive, 915 days 524.2
TCGA-24-2293-01A 47 years, female, white, dead, 506 days 517.4
TCGA-24-2262-01A 57 years, female, white, dead, 11 days 513.9
TCGA-25-1628-01A 67 years, female, white, dead, 627 days 513.6
TCGA-61-2111-01A 61 years, female, white, alive, 3825 days 513.6
TCGA-13-1511-01A 52 years, female, asian, dead, 1650 days 513.3
TCGA-29-1710-01A 54 years, female, white, dead, 951 days 510.4
TCGA-31-1946-01A 30 years, female, alive, 918 days 509.8
TCGA-24-1425-01A 45 years, female, white, alive, 181 days 508.3
TCGA-OY-A56Q-01A 78 years, female, black or african american, alive, 576 days 504.1
TCGA-13-1403-01A 48 years, female, white, dead, 2345 days 500.7
TCGA-61-2003-01A 53 years, female, white, alive, 122 days 500.7
TCGA-29-A5NZ-01A 66 years, female, black or african american, dead, 1088 days 498.7
TCGA-09-0366-01A 56 years, female, white, dead, 1757 days 487.8
TCGA-23-2078-01A 66 years, female, white, alive, 2661 days 476.6
TCGA-24-1603-01A 53 years, female, white, dead, 2742 days 476.5
TCGA-30-1857-01A 64 years, female, white, dead, 8 days 471.8
TCGA-24-1474-01A 57 years, female, black or african american, dead, 676 days 468.2
TCGA-23-1123-01A 59 years, female, white, dead, 1018 days 467.9
TCGA-09-2051-01A 42 years, female, white, alive, 1919 days 464.3
TCGA-24-1557-01A 49 years, female, white, dead, 1213 days 461.7
TCGA-13-0897-01A 54 years, female, white, dead, 2182 days 456.4
TCGA-25-2399-01A 80 years, female, white, dead, 608 days 454.8
TCGA-25-1635-01A 71 years, female, white, dead, 1583 days 449.2
TCGA-57-1994-01A 63 years, female, white, alive, 761 days 448.1
TCGA-29-1691-01A 51 years, female, white, dead, 1470 days 444.5
TCGA-24-2289-01A 69 years, female, white, dead, 2049 days 443.4
TCGA-24-2254-01A 66 years, female, white, dead, 1736 days 441.3
TCGA-24-1435-01A 57 years, female, white, dead, 1324 days 438.5
TCGA-04-1365-01A 87 years, female, white, alive, 2329 days 437.3
TCGA-24-1847-01A 45 years, female, white, alive, 343 days 436.4
TCGA-13-1496-01A 65 years, female, white, dead, 129 days 435.0
TCGA-04-1530-01A 68 years, female, white, dead, 3622 days 423.1
TCGA-09-1665-01B 74 years, female, white, dead, 1266 days 420.2
TCGA-36-1574-01A 48 years, female, asian, alive, 686 days 409.9
TCGA-29-1697-01A 62 years, female, white, dead, 949 days 403.9
TCGA-24-1558-01A 73 years, female, white, dead, 594 days 390.0
TCGA-13-0768-01A 73 years, female, white, dead, 1784 days 387.0
TCGA-24-1549-01A 58 years, female, white, dead, 1721 days 379.6
TCGA-13-0916-01A 49 years, female, white, alive, 1785 days 375.5
TCGA-61-2113-01A 54 years, female, white, dead, 676 days 372.3
TCGA-25-2392-01A 75 years, female, white, dead, 31 days 355.5
TCGA-04-1536-01A 60 years, female, black or african american, dead, 885 days 331.3
TCGA-13-0908-01B 58 years, female, white, dead, 1843 days 330.0
TCGA-24-1470-01A 54 years, female, white, alive, 105 days 321.5
TCGA-25-1319-01A 73 years, female, white, dead, 1977 days 320.3
TCGA-24-1423-01A 61 years, female, white, alive, 190 days 318.9
TCGA-04-1648-01A 57 years, female, white, dead, 871 days 305.0
TCGA-24-2036-01A 50 years, female, white, dead, 1947 days 285.1
TCGA-31-1950-01A 76 years, female, white, alive, 571 days 284.6
TCGA-61-2102-01A 74 years, female, white, dead, 197 days 245.1
TCGA-09-1668-01B 57 years, female, white, alive, 1684 days 244.0
TCGA-61-2088-01A 51 years, female, white, alive, 145 days 221.7
TCGA-36-1581-01A 63 years, female, white, alive, 751 days 217.1
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OVARIAN CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more

Antibody HPA038751
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Click images for details

Contact

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The Human Protein Atlas

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.