MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA:34.9 nTPM
GTEx:49.9 nTPM
FANTOM5:50.4 Scaled Tags Per Million
Pig:11.5 nTPM
Mouse:30.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.3
1870 Female, age 42, unknown 35.8
2411 Female, age 72, unknown 35.8
2828 Female, age 72, unknown 34.9
1827 Male, age 72, unknown 34.5
1830 Male, age 51, unknown 34.3
2019 Male, age 18, unknown 34.3
2219 Male, age 76, both hemispheres 33.8
2666 Male, age 74, left hemisphere 33.8
1833 Male, age 53, unknown 33.7
2586 Male, age 75, left hemisphere 32.7
Dorsal raphe nucleus
nTPM: 33.3
2750 Male, age 76, both hemispheres 34.5
2298 Female, age 72, unknown 34.3
1828 Male, age 53, unknown 33.3
2047 Male, age 72, unknown 32.5
2016 Female, age 72, unknown 32.0
Inferior colliculus
nTPM: 32.7
2097 Female, age 72, unknown 34.3
2849 Male, age 72, unknown 33.7
1848 Female, age 42, unknown 32.4
1890 Male, age 53, unknown 30.6
Median raphe nucleus
nTPM: 33.8
2220 Male, age 76, midline 33.8
Pedunculopontine tegmental nucleus
nTPM: 32.8
2334 Male, age 80, both hemispheres 34.8
1921 Female, age 85, both hemispheres 32.4
2338 Male, age 61, both hemispheres 31.4
Periaquaductal grey, anterior
nTPM: 33.5
2502 Female, age 75, unknown 34.6
1947 Male, age 18, unknown 33.3
1795 Male, age 51, unknown 32.5
Periaquaductal grey, dorsal
nTPM: 31.6
1840 Male, age 53, unknown 33.3
2464 Female, age 72, unknown 32.1
1831 Male, age 72, unknown 31.1
2850 Male, age 76, both hemispheres 29.9
Periaquaductal grey, lateral
nTPM: 31.3
2272 Male, age 74, both hemispheres 33.3
2053 Male, age 18, unknown 30.3
2140 Male, age 76, both hemispheres 30.2
Pretectal area
nTPM: 32.8
1817 Female, age 42, unknown 35.2
2007 Male, age 72, unknown 34.5
1944 Female, age 72, unknown 34.4
1816 Male, age 51, unknown 33.9
2224 Female, age 72, unknown 33.6
1815 Male, age 53, unknown 33.3
2316 Male, age 76, right hemisphere 32.1
2273 Male, age 74, both hemispheres 31.6
2667 Female, age 75, unknown 31.4
2825 Male, age 18, unknown 31.1
2407 Male, age 75, both hemispheres 29.5
Red nucleus
nTPM: 34.9
2503 Female, age 72, unknown 37.6
2769 Male, age 72, unknown 36.5
1821 Female, age 72, unknown 36.2
2227 Male, age 72, unknown 35.8
1904 Male, age 53, unknown 35.7
2785 Male, age 18, unknown 34.9
2725 Female, age 75, unknown 34.8
1865 Male, age 51, unknown 34.6
2823 Male, age 76, right hemisphere 34.2
2588 Male, age 74, left hemisphere 33.5
2584 Male, age 75, left hemisphere 32.9
1954 Female, age 42, unknown 32.2
Substantia nigra
nTPM: 33.0
1916 Female, age 42, unknown 37.3
1851 Male, age 51, unknown 35.5
2699 Male, age 18, unknown 34.9
2665 Male, age 74, both hemispheres 34.7
1889 Female, age 72, unknown 33.7
1941 Male, age 53, unknown 33.2
2583 Male, age 75, right hemisphere 31.9
2590 Female, age 75, unknown 31.7
2409 Female, age 72, unknown 28.8
2241 Male, age 72, unknown 28.6
Superior colliculus
nTPM: 33.6
1913 Female, age 42, unknown 35.0
2668 Female, age 75, unknown 35.0
1796 Male, age 53, unknown 34.8
1995 Male, age 72, unknown 34.7
2261 Male, age 18, unknown 34.4
2587 Male, age 74, left hemisphere 34.0
1895 Male, age 76, right hemisphere 32.9
2664 Male, age 75, both hemispheres 32.4
1839 Male, age 51, unknown 32.2
2087 Female, age 72, unknown 30.8
Ventral tegmental area
nTPM: 34.0
2410 Female, age 72, unknown 37.8
1915 Female, age 42, unknown 34.6
2223 Female, age 72, unknown 33.6
2218 Male, age 76, both hemispheres 33.1
1942 Male, age 51, unknown 32.7
2021 Male, age 53, unknown 32.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.9
Samples: 139

Max nTPM: 114.5
Min nTPM: 20.1
Std nTPM: 11.9
Median nTPM: 48.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 114.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 93.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 83.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 82.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 74.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 72.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 70.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 70.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 68.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 66.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 66.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.4
FF:10158-103A5 76 years, female 50.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.5
Pig sample Sample description nTPM
Midbrain
nTPM: 11.0
Samples: 4

Max nTPM: 15.1
Min nTPM: 9.2
Sample A Female 15.1
Sample B Female 10.3
Sample C Male 9.4
Sample D Male 9.2
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 9.0
Min nTPM: 8.0
Sample B Female 9.0
Sample C Male 8.8
Sample D Male 8.0
Substantia nigra
nTPM: 10.7
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.2
Sample A Female 11.8
Sample B Female 9.2
Sample C Male 10.5
Sample D Male 11.3
Superior colliculi
nTPM: 11.5
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.9
Sample A Female 12.0
Sample B Female 10.9
Sample C Male 11.9
Sample D Male 11.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.7
Samples: 4

Max nTPM: 34.5
Min nTPM: 27.2
Sample A Male 34.5
Sample B Male 27.2
Sample C Female 27.3
Sample D Female 33.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69782324 Antisense, RP_050505_02_G04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.