MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.5 nTPM
HPA:47.5 nTPM
GTEx:59.7 nTPM
FANTOM5:72.8 Scaled Tags Per Million
Pig:56.5 nTPM
Mouse:79.9 nTPM
Allen mouse:17.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.6
1870 Female, age 42, unknown 48.3
1827 Male, age 72, unknown 46.4
2828 Female, age 72, unknown 46.0
2666 Male, age 74, left hemisphere 45.5
2019 Male, age 18, unknown 43.7
1833 Male, age 53, unknown 43.5
1830 Male, age 51, unknown 42.7
2586 Male, age 75, left hemisphere 40.7
2219 Male, age 76, both hemispheres 39.5
2411 Female, age 72, unknown 39.5
Dorsal raphe nucleus
nTPM: 40.4
2016 Female, age 72, unknown 44.0
2750 Male, age 76, both hemispheres 41.6
2298 Female, age 72, unknown 40.5
1828 Male, age 53, unknown 40.3
2047 Male, age 72, unknown 35.8
Inferior colliculus
nTPM: 45.8
2849 Male, age 72, unknown 49.8
1848 Female, age 42, unknown 45.6
1890 Male, age 53, unknown 45.1
2097 Female, age 72, unknown 42.7
Median raphe nucleus
nTPM: 43.1
2220 Male, age 76, midline 43.1
Pedunculopontine tegmental nucleus
nTPM: 44.7
2338 Male, age 61, both hemispheres 49.5
2334 Male, age 80, both hemispheres 46.1
1921 Female, age 85, both hemispheres 38.6
Periaquaductal grey, anterior
nTPM: 45.5
2502 Female, age 75, unknown 49.0
1947 Male, age 18, unknown 44.0
1795 Male, age 51, unknown 43.4
Periaquaductal grey, dorsal
nTPM: 47.5
2850 Male, age 76, both hemispheres 56.7
1831 Male, age 72, unknown 46.1
1840 Male, age 53, unknown 45.8
2464 Female, age 72, unknown 41.3
Periaquaductal grey, lateral
nTPM: 45.9
2140 Male, age 76, both hemispheres 50.1
2053 Male, age 18, unknown 45.4
2272 Male, age 74, both hemispheres 42.2
Pretectal area
nTPM: 46.6
1816 Male, age 51, unknown 53.6
1815 Male, age 53, unknown 50.0
1944 Female, age 72, unknown 49.6
1817 Female, age 42, unknown 49.3
2007 Male, age 72, unknown 46.8
2407 Male, age 75, both hemispheres 46.2
2224 Female, age 72, unknown 44.1
2273 Male, age 74, both hemispheres 44.1
2825 Male, age 18, unknown 43.5
2316 Male, age 76, right hemisphere 43.2
2667 Female, age 75, unknown 42.6
Red nucleus
nTPM: 46.9
2503 Female, age 72, unknown 53.8
2725 Female, age 75, unknown 50.4
1865 Male, age 51, unknown 49.2
2785 Male, age 18, unknown 49.1
1954 Female, age 42, unknown 48.4
1904 Male, age 53, unknown 47.8
2227 Male, age 72, unknown 46.5
2823 Male, age 76, right hemisphere 45.3
2588 Male, age 74, left hemisphere 43.7
2769 Male, age 72, unknown 43.7
1821 Female, age 72, unknown 43.2
2584 Male, age 75, left hemisphere 41.6
Substantia nigra
nTPM: 39.8
1889 Female, age 72, unknown 45.6
2665 Male, age 74, both hemispheres 43.6
2590 Female, age 75, unknown 43.2
2699 Male, age 18, unknown 40.6
2583 Male, age 75, right hemisphere 40.5
1941 Male, age 53, unknown 38.2
2409 Female, age 72, unknown 38.2
1851 Male, age 51, unknown 37.4
2241 Male, age 72, unknown 36.1
1916 Female, age 42, unknown 34.4
Superior colliculus
nTPM: 46.6
1995 Male, age 72, unknown 54.4
1913 Female, age 42, unknown 53.5
2587 Male, age 74, left hemisphere 48.7
2087 Female, age 72, unknown 47.7
2261 Male, age 18, unknown 47.6
1796 Male, age 53, unknown 45.7
1839 Male, age 51, unknown 43.8
1895 Male, age 76, right hemisphere 43.3
2664 Male, age 75, both hemispheres 41.0
2668 Female, age 75, unknown 39.8
Ventral tegmental area
nTPM: 40.6
2223 Female, age 72, unknown 44.6
2218 Male, age 76, both hemispheres 42.4
2021 Male, age 53, unknown 40.4
1942 Male, age 51, unknown 40.0
1915 Female, age 42, unknown 39.1
2410 Female, age 72, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.7
Samples: 139

Max nTPM: 102.1
Min nTPM: 33.8
Std nTPM: 13.3
Median nTPM: 58.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 102.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 99.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 96.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 95.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 86.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 85.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 83.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 83.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 81.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 79.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 78.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.8
FF:10158-103A5 76 years, female 72.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.5
Pig sample Sample description nTPM
Midbrain
nTPM: 56.5
Samples: 4

Max nTPM: 76.2
Min nTPM: 45.9
Sample A Female 76.2
Sample B Female 53.3
Sample C Male 50.7
Sample D Male 45.9
Periaqueductal gray
nTPM: 50.8
Samples: 3

Max nTPM: 55.2
Min nTPM: 48.5
Sample B Female 48.5
Sample C Male 55.2
Sample D Male 48.8
Substantia nigra
nTPM: 49.8
Samples: 4

Max nTPM: 54.2
Min nTPM: 44.7
Sample A Female 54.2
Sample B Female 52.3
Sample C Male 44.7
Sample D Male 47.9
Superior colliculi
nTPM: 56.0
Samples: 4

Max nTPM: 60.2
Min nTPM: 51.9
Sample A Female 60.2
Sample B Female 59.4
Sample C Male 52.4
Sample D Male 51.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.9
Samples: 4

Max nTPM: 84.2
Min nTPM: 77.1
Sample A Male 84.2
Sample B Male 78.3
Sample C Female 77.1
Sample D Female 80.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.9
532664 Antisense, RP_040825_01_B10, Mouse strain C57BL/6J (56 days, male) 17.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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