MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.4 nTPM
HPA:44.4 nTPM
GTEx:75.8 nTPM
FANTOM5:267.5 Scaled Tags Per Million
Pig:114.0 nTPM
Mouse:284.3 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.6
2411 Female, age 72, unknown 65.4
1870 Female, age 42, unknown 61.3
1827 Male, age 72, unknown 48.0
2219 Male, age 76, both hemispheres 44.8
1833 Male, age 53, unknown 41.5
1830 Male, age 51, unknown 40.2
2828 Female, age 72, unknown 26.4
2666 Male, age 74, left hemisphere 26.0
2019 Male, age 18, unknown 23.6
2586 Male, age 75, left hemisphere 18.5
Dorsal raphe nucleus
nTPM: 39.2
2750 Male, age 76, both hemispheres 50.0
2298 Female, age 72, unknown 48.5
2047 Male, age 72, unknown 35.3
1828 Male, age 53, unknown 33.9
2016 Female, age 72, unknown 28.3
Inferior colliculus
nTPM: 44.0
2097 Female, age 72, unknown 58.4
1848 Female, age 42, unknown 48.3
2849 Male, age 72, unknown 43.9
1890 Male, age 53, unknown 25.4
Median raphe nucleus
nTPM: 42.6
2220 Male, age 76, midline 42.6
Pedunculopontine tegmental nucleus
nTPM: 44.4
2334 Male, age 80, both hemispheres 55.6
1921 Female, age 85, both hemispheres 50.9
2338 Male, age 61, both hemispheres 26.6
Periaquaductal grey, anterior
nTPM: 37.1
1947 Male, age 18, unknown 44.9
2502 Female, age 75, unknown 37.9
1795 Male, age 51, unknown 28.5
Periaquaductal grey, dorsal
nTPM: 36.5
1840 Male, age 53, unknown 52.7
2464 Female, age 72, unknown 41.1
1831 Male, age 72, unknown 30.9
2850 Male, age 76, both hemispheres 21.2
Periaquaductal grey, lateral
nTPM: 29.8
2053 Male, age 18, unknown 46.1
2272 Male, age 74, both hemispheres 26.2
2140 Male, age 76, both hemispheres 17.1
Pretectal area
nTPM: 40.5
2825 Male, age 18, unknown 53.9
2224 Female, age 72, unknown 52.5
1816 Male, age 51, unknown 47.3
2007 Male, age 72, unknown 45.8
1815 Male, age 53, unknown 42.0
1944 Female, age 72, unknown 41.4
1817 Female, age 42, unknown 36.2
2316 Male, age 76, right hemisphere 35.5
2407 Male, age 75, both hemispheres 30.5
2273 Male, age 74, both hemispheres 30.3
2667 Female, age 75, unknown 29.6
Red nucleus
nTPM: 35.9
1821 Female, age 72, unknown 52.8
1954 Female, age 42, unknown 46.3
2503 Female, age 72, unknown 42.3
2725 Female, age 75, unknown 41.7
1865 Male, age 51, unknown 40.2
1904 Male, age 53, unknown 34.5
2769 Male, age 72, unknown 32.8
2227 Male, age 72, unknown 32.0
2588 Male, age 74, left hemisphere 31.9
2823 Male, age 76, right hemisphere 27.0
2785 Male, age 18, unknown 26.1
2584 Male, age 75, left hemisphere 23.0
Substantia nigra
nTPM: 36.9
2241 Male, age 72, unknown 50.1
2409 Female, age 72, unknown 48.3
1889 Female, age 72, unknown 47.6
1941 Male, age 53, unknown 39.6
2583 Male, age 75, right hemisphere 38.9
1851 Male, age 51, unknown 36.2
2590 Female, age 75, unknown 32.9
1916 Female, age 42, unknown 30.0
2699 Male, age 18, unknown 24.3
2665 Male, age 74, both hemispheres 20.9
Superior colliculus
nTPM: 41.8
1895 Male, age 76, right hemisphere 56.9
2587 Male, age 74, left hemisphere 49.6
2668 Female, age 75, unknown 48.6
1839 Male, age 51, unknown 46.5
1913 Female, age 42, unknown 45.6
2261 Male, age 18, unknown 42.9
1796 Male, age 53, unknown 42.4
2087 Female, age 72, unknown 40.8
1995 Male, age 72, unknown 28.2
2664 Male, age 75, both hemispheres 16.6
Ventral tegmental area
nTPM: 40.7
2410 Female, age 72, unknown 54.7
2223 Female, age 72, unknown 50.4
2021 Male, age 53, unknown 38.9
1915 Female, age 42, unknown 36.8
2218 Male, age 76, both hemispheres 32.6
1942 Male, age 51, unknown 30.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.8
Samples: 139

Max nTPM: 155.0
Min nTPM: 29.1
Std nTPM: 24.1
Median nTPM: 70.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 155.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 146.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 144.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 134.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 133.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 132.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 132.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 125.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 119.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 117.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 116.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 267.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 267.5
FF:10158-103A5 76 years, female 267.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 114.0
Pig sample Sample description nTPM
Midbrain
nTPM: 114.0
Samples: 4

Max nTPM: 135.1
Min nTPM: 94.1
Sample A Female 94.1
Sample B Female 114.5
Sample C Male 112.2
Sample D Male 135.1
Periaqueductal gray
nTPM: 96.8
Samples: 3

Max nTPM: 104.9
Min nTPM: 90.8
Sample B Female 90.8
Sample C Male 104.9
Sample D Male 94.7
Substantia nigra
nTPM: 92.2
Samples: 4

Max nTPM: 121.2
Min nTPM: 66.8
Sample A Female 121.2
Sample B Female 76.0
Sample C Male 104.6
Sample D Male 66.8
Superior colliculi
nTPM: 92.9
Samples: 4

Max nTPM: 112.9
Min nTPM: 54.1
Sample A Female 112.9
Sample B Female 54.1
Sample C Male 97.7
Sample D Male 106.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 284.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 284.3
Samples: 4

Max nTPM: 303.7
Min nTPM: 267.5
Sample A Male 267.5
Sample B Male 282.0
Sample C Female 303.7
Sample D Female 283.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
75043158 Antisense, RP_060412_05_B09, Mouse strain C57BL/6J (56 days, male) 6.7
73424011 Antisense, RP_051019_03_C04, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.