MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:958.9 nTPM
HPA:958.9 nTPM
GTEx:989.2 nTPM
FANTOM5:12.2 Scaled Tags Per Million
Pig:274.7 nTPM
Mouse:537.5 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 958.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 946.3
2666 Male, age 74, left hemisphere 973.6
2411 Female, age 72, unknown 968.6
1870 Female, age 42, unknown 961.0
1830 Male, age 51, unknown 949.0
2828 Female, age 72, unknown 946.6
1827 Male, age 72, unknown 942.5
2586 Male, age 75, left hemisphere 937.7
2019 Male, age 18, unknown 936.6
1833 Male, age 53, unknown 935.7
2219 Male, age 76, both hemispheres 911.2
Dorsal raphe nucleus
nTPM: 943.0
2298 Female, age 72, unknown 958.4
2750 Male, age 76, both hemispheres 955.2
2016 Female, age 72, unknown 952.6
1828 Male, age 53, unknown 934.0
2047 Male, age 72, unknown 915.1
Inferior colliculus
nTPM: 937.5
1890 Male, age 53, unknown 944.1
2097 Female, age 72, unknown 942.7
2849 Male, age 72, unknown 933.3
1848 Female, age 42, unknown 930.0
Median raphe nucleus
nTPM: 930.9
2220 Male, age 76, midline 930.9
Pedunculopontine tegmental nucleus
nTPM: 950.8
2338 Male, age 61, both hemispheres 967.4
2334 Male, age 80, both hemispheres 961.4
1921 Female, age 85, both hemispheres 923.6
Periaquaductal grey, anterior
nTPM: 943.5
2502 Female, age 75, unknown 977.7
1947 Male, age 18, unknown 930.7
1795 Male, age 51, unknown 922.2
Periaquaductal grey, dorsal
nTPM: 939.9
1840 Male, age 53, unknown 955.0
2464 Female, age 72, unknown 947.9
1831 Male, age 72, unknown 942.7
2850 Male, age 76, both hemispheres 913.9
Periaquaductal grey, lateral
nTPM: 926.8
2053 Male, age 18, unknown 945.6
2272 Male, age 74, both hemispheres 924.4
2140 Male, age 76, both hemispheres 910.4
Pretectal area
nTPM: 931.3
2224 Female, age 72, unknown 948.5
2316 Male, age 76, right hemisphere 945.9
2825 Male, age 18, unknown 945.3
1815 Male, age 53, unknown 942.9
1817 Female, age 42, unknown 933.5
2007 Male, age 72, unknown 928.3
2273 Male, age 74, both hemispheres 925.1
1816 Male, age 51, unknown 923.6
1944 Female, age 72, unknown 919.0
2407 Male, age 75, both hemispheres 918.9
2667 Female, age 75, unknown 913.3
Red nucleus
nTPM: 955.2
2503 Female, age 72, unknown 995.0
1821 Female, age 72, unknown 976.4
1865 Male, age 51, unknown 966.4
1904 Male, age 53, unknown 961.5
2588 Male, age 74, left hemisphere 954.4
2227 Male, age 72, unknown 951.8
2725 Female, age 75, unknown 951.7
2584 Male, age 75, left hemisphere 951.5
2769 Male, age 72, unknown 949.3
1954 Female, age 42, unknown 939.9
2785 Male, age 18, unknown 932.9
2823 Male, age 76, right hemisphere 931.9
Substantia nigra
nTPM: 958.9
2699 Male, age 18, unknown 988.5
2665 Male, age 74, both hemispheres 986.9
1851 Male, age 51, unknown 983.7
2241 Male, age 72, unknown 971.1
2409 Female, age 72, unknown 963.3
2590 Female, age 75, unknown 955.9
1916 Female, age 42, unknown 952.0
1889 Female, age 72, unknown 936.1
1941 Male, age 53, unknown 931.8
2583 Male, age 75, right hemisphere 920.0
Superior colliculus
nTPM: 949.8
2587 Male, age 74, left hemisphere 986.9
1995 Male, age 72, unknown 983.9
1913 Female, age 42, unknown 967.4
1839 Male, age 51, unknown 952.8
1796 Male, age 53, unknown 943.6
2668 Female, age 75, unknown 939.9
1895 Male, age 76, right hemisphere 938.5
2664 Male, age 75, both hemispheres 935.2
2261 Male, age 18, unknown 929.3
2087 Female, age 72, unknown 920.8
Ventral tegmental area
nTPM: 956.8
1915 Female, age 42, unknown 975.2
2223 Female, age 72, unknown 970.3
2021 Male, age 53, unknown 963.9
2410 Female, age 72, unknown 959.2
1942 Male, age 51, unknown 943.6
2218 Male, age 76, both hemispheres 928.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 989.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 989.2
Samples: 139

Max nTPM: 3177.1
Min nTPM: 388.1
Std nTPM: 386.6
Median nTPM: 902.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3177.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2315.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2050.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1894.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1747.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1648.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1624.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1623.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1585.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1552.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1532.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.2
FF:10158-103A5 76 years, female 12.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 274.7
Pig sample Sample description nTPM
Midbrain
nTPM: 251.4
Samples: 4

Max nTPM: 366.1
Min nTPM: 159.5
Sample A Female 366.1
Sample B Female 279.2
Sample C Male 200.6
Sample D Male 159.5
Periaqueductal gray
nTPM: 200.0
Samples: 3

Max nTPM: 213.1
Min nTPM: 183.8
Sample B Female 213.1
Sample C Male 203.1
Sample D Male 183.8
Substantia nigra
nTPM: 268.7
Samples: 4

Max nTPM: 348.9
Min nTPM: 220.9
Sample A Female 348.9
Sample B Female 281.1
Sample C Male 224.0
Sample D Male 220.9
Superior colliculi
nTPM: 274.7
Samples: 4

Max nTPM: 311.8
Min nTPM: 222.0
Sample A Female 311.8
Sample B Female 306.2
Sample C Male 258.6
Sample D Male 222.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 537.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 537.6
Samples: 4

Max nTPM: 594.8
Min nTPM: 502.5
Sample A Male 594.8
Sample B Male 513.4
Sample C Female 502.5
Sample D Female 539.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
69549280 Antisense, RP_050126_02_C10, Mouse strain C57BL/6J (56 days, male) 11.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.