MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.6 nTPM
HPA:43.6 nTPM
GTEx:29.3 nTPM
FANTOM5:62.4 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:25.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.6
2586 Male, age 75, left hemisphere 60.1
1827 Male, age 72, unknown 43.4
2411 Female, age 72, unknown 35.5
2828 Female, age 72, unknown 34.9
2219 Male, age 76, both hemispheres 33.8
2019 Male, age 18, unknown 29.4
1833 Male, age 53, unknown 28.8
1870 Female, age 42, unknown 28.6
1830 Male, age 51, unknown 26.0
2666 Male, age 74, left hemisphere 25.9
Dorsal raphe nucleus
nTPM: 30.1
2298 Female, age 72, unknown 36.2
2750 Male, age 76, both hemispheres 34.3
2047 Male, age 72, unknown 28.2
2016 Female, age 72, unknown 27.8
1828 Male, age 53, unknown 24.1
Inferior colliculus
nTPM: 24.8
2097 Female, age 72, unknown 27.5
2849 Male, age 72, unknown 25.8
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 22.0
Median raphe nucleus
nTPM: 33.0
2220 Male, age 76, midline 33.0
Pedunculopontine tegmental nucleus
nTPM: 26.8
1921 Female, age 85, both hemispheres 31.8
2334 Male, age 80, both hemispheres 27.8
2338 Male, age 61, both hemispheres 20.9
Periaquaductal grey, anterior
nTPM: 38.5
2502 Female, age 75, unknown 44.8
1795 Male, age 51, unknown 44.7
1947 Male, age 18, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 32.4
1840 Male, age 53, unknown 36.6
1831 Male, age 72, unknown 31.7
2464 Female, age 72, unknown 30.7
2850 Male, age 76, both hemispheres 30.7
Periaquaductal grey, lateral
nTPM: 33.8
2053 Male, age 18, unknown 37.6
2272 Male, age 74, both hemispheres 35.7
2140 Male, age 76, both hemispheres 28.1
Pretectal area
nTPM: 43.6
1816 Male, age 51, unknown 65.6
1944 Female, age 72, unknown 59.3
1815 Male, age 53, unknown 51.2
2667 Female, age 75, unknown 44.3
2007 Male, age 72, unknown 43.1
2407 Male, age 75, both hemispheres 42.0
1817 Female, age 42, unknown 41.4
2273 Male, age 74, both hemispheres 36.4
2825 Male, age 18, unknown 35.7
2224 Female, age 72, unknown 35.6
2316 Male, age 76, right hemisphere 24.4
Red nucleus
nTPM: 27.5
2584 Male, age 75, left hemisphere 33.7
2725 Female, age 75, unknown 33.6
2785 Male, age 18, unknown 32.7
2588 Male, age 74, left hemisphere 31.8
1904 Male, age 53, unknown 30.1
2503 Female, age 72, unknown 27.1
2227 Male, age 72, unknown 26.9
1865 Male, age 51, unknown 23.5
1821 Female, age 72, unknown 23.1
1954 Female, age 42, unknown 22.8
2769 Male, age 72, unknown 22.7
2823 Male, age 76, right hemisphere 22.1
Substantia nigra
nTPM: 38.1
1851 Male, age 51, unknown 43.9
1916 Female, age 42, unknown 43.7
1889 Female, age 72, unknown 38.3
2699 Male, age 18, unknown 37.9
2409 Female, age 72, unknown 37.6
1941 Male, age 53, unknown 37.3
2241 Male, age 72, unknown 36.4
2665 Male, age 74, both hemispheres 35.9
2583 Male, age 75, right hemisphere 35.4
2590 Female, age 75, unknown 34.6
Superior colliculus
nTPM: 40.8
2664 Male, age 75, both hemispheres 59.4
2261 Male, age 18, unknown 57.0
2087 Female, age 72, unknown 50.6
1796 Male, age 53, unknown 45.8
1913 Female, age 42, unknown 42.1
1995 Male, age 72, unknown 39.1
2587 Male, age 74, left hemisphere 30.3
1839 Male, age 51, unknown 29.0
2668 Female, age 75, unknown 28.1
1895 Male, age 76, right hemisphere 27.0
Ventral tegmental area
nTPM: 36.3
2410 Female, age 72, unknown 42.5
2218 Male, age 76, both hemispheres 38.1
1915 Female, age 42, unknown 36.0
2223 Female, age 72, unknown 35.4
2021 Male, age 53, unknown 33.0
1942 Male, age 51, unknown 32.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.3
Samples: 139

Max nTPM: 57.4
Min nTPM: 11.8
Std nTPM: 8.2
Median nTPM: 29.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 57.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 54.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 48.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 46.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 44.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 43.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 42.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 42.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 41.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 41.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 40.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.4
FF:10158-103A5 76 years, female 62.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.8
Pig sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.8
Sample A Female 14.4
Sample B Female 11.8
Sample C Male 12.7
Sample D Male 13.8
Periaqueductal gray
nTPM: 14.8
Samples: 3

Max nTPM: 17.9
Min nTPM: 12.9
Sample B Female 13.6
Sample C Male 17.9
Sample D Male 12.9
Substantia nigra
nTPM: 13.8
Samples: 4

Max nTPM: 17.5
Min nTPM: 10.5
Sample A Female 16.5
Sample B Female 10.5
Sample C Male 17.5
Sample D Male 10.6
Superior colliculi
nTPM: 12.0
Samples: 4

Max nTPM: 14.7
Min nTPM: 9.0
Sample A Female 14.7
Sample B Female 12.2
Sample C Male 9.0
Sample D Male 12.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 23.2
Sample A Male 23.7
Sample B Male 23.2
Sample C Female 26.6
Sample D Female 26.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.