MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.1 nTPM
HPA:52.1 nTPM
GTEx:56.0 nTPM
FANTOM5:57.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.8
1870 Female, age 42, unknown 50.8
2828 Female, age 72, unknown 48.3
2411 Female, age 72, unknown 48.0
1833 Male, age 53, unknown 47.1
1827 Male, age 72, unknown 46.3
1830 Male, age 51, unknown 44.5
2019 Male, age 18, unknown 44.5
2219 Male, age 76, both hemispheres 43.3
2586 Male, age 75, left hemisphere 43.2
2666 Male, age 74, left hemisphere 41.6
Dorsal raphe nucleus
nTPM: 52.1
2016 Female, age 72, unknown 57.2
2298 Female, age 72, unknown 56.4
1828 Male, age 53, unknown 50.2
2047 Male, age 72, unknown 48.8
2750 Male, age 76, both hemispheres 48.1
Inferior colliculus
nTPM: 47.7
2097 Female, age 72, unknown 50.9
1848 Female, age 42, unknown 47.7
2849 Male, age 72, unknown 46.3
1890 Male, age 53, unknown 45.9
Median raphe nucleus
nTPM: 46.6
2220 Male, age 76, midline 46.6
Pedunculopontine tegmental nucleus
nTPM: 46.3
1921 Female, age 85, both hemispheres 48.0
2334 Male, age 80, both hemispheres 46.5
2338 Male, age 61, both hemispheres 44.5
Periaquaductal grey, anterior
nTPM: 46.4
1795 Male, age 51, unknown 47.9
1947 Male, age 18, unknown 47.0
2502 Female, age 75, unknown 44.3
Periaquaductal grey, dorsal
nTPM: 50.7
2850 Male, age 76, both hemispheres 53.2
1840 Male, age 53, unknown 52.9
2464 Female, age 72, unknown 48.7
1831 Male, age 72, unknown 48.2
Periaquaductal grey, lateral
nTPM: 51.3
2140 Male, age 76, both hemispheres 51.7
2053 Male, age 18, unknown 51.4
2272 Male, age 74, both hemispheres 50.7
Pretectal area
nTPM: 47.7
2224 Female, age 72, unknown 54.3
2273 Male, age 74, both hemispheres 54.0
2825 Male, age 18, unknown 49.0
2316 Male, age 76, right hemisphere 48.9
2667 Female, age 75, unknown 48.6
1815 Male, age 53, unknown 47.3
1816 Male, age 51, unknown 46.3
1817 Female, age 42, unknown 46.1
1944 Female, age 72, unknown 46.0
2007 Male, age 72, unknown 42.3
2407 Male, age 75, both hemispheres 41.8
Red nucleus
nTPM: 46.3
1821 Female, age 72, unknown 49.3
1954 Female, age 42, unknown 48.9
2769 Male, age 72, unknown 48.3
2503 Female, age 72, unknown 48.2
1904 Male, age 53, unknown 48.0
2823 Male, age 76, right hemisphere 47.7
2227 Male, age 72, unknown 47.5
2725 Female, age 75, unknown 46.9
1865 Male, age 51, unknown 46.5
2785 Male, age 18, unknown 43.0
2588 Male, age 74, left hemisphere 41.2
2584 Male, age 75, left hemisphere 39.5
Substantia nigra
nTPM: 47.4
2241 Male, age 72, unknown 50.7
2699 Male, age 18, unknown 50.6
1851 Male, age 51, unknown 49.5
2590 Female, age 75, unknown 48.6
1916 Female, age 42, unknown 48.1
2409 Female, age 72, unknown 47.9
1889 Female, age 72, unknown 46.5
2583 Male, age 75, right hemisphere 44.5
2665 Male, age 74, both hemispheres 44.3
1941 Male, age 53, unknown 43.7
Superior colliculus
nTPM: 46.9
1995 Male, age 72, unknown 51.1
1913 Female, age 42, unknown 49.2
2587 Male, age 74, left hemisphere 48.1
2087 Female, age 72, unknown 47.1
1796 Male, age 53, unknown 46.7
1895 Male, age 76, right hemisphere 46.7
1839 Male, age 51, unknown 46.0
2261 Male, age 18, unknown 46.0
2668 Female, age 75, unknown 45.6
2664 Male, age 75, both hemispheres 42.8
Ventral tegmental area
nTPM: 48.3
2021 Male, age 53, unknown 50.0
1915 Female, age 42, unknown 49.9
2410 Female, age 72, unknown 49.0
2223 Female, age 72, unknown 47.6
1942 Male, age 51, unknown 47.1
2218 Male, age 76, both hemispheres 46.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.0
Samples: 139

Max nTPM: 139.1
Min nTPM: 20.7
Std nTPM: 20.4
Median nTPM: 52.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 139.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 132.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 125.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 107.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 106.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 99.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 95.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 92.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 91.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 90.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 85.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.6
FF:10158-103A5 76 years, female 57.6

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The Human Protein Atlas

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