BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.5 nTPM
HPA:17.5 nTPM
GTEx:18.8 nTPM
FANTOM5:108.9 Scaled Tags Per Million
Pig:37.4 nTPM
Mouse:52.4 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 17.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.1
2846 Female, age 79, unknown 16.7
1781 Male, age 74, unknown 13.2
1857 Female, age 85, left hemisphere 10.3
2290 Female, age 72, unknown 9.4
2481 Female, age 94, left hemisphere 9.0
2288 Male, age 75, left hemisphere 8.5
1854 Male, age 80, left hemisphere 7.7
2289 Male, age 61, right hemisphere 6.3
Claustrum
nTPM: 13.3
1956 Male, age 74, unknown 17.8
2198 Male, age 80, both hemispheres 14.9
2196 Female, age 79, unknown 13.8
2568 Male, age 61, both hemispheres 13.5
2645 Female, age 72, unknown 12.9
2284 Female, age 91, both hemispheres 12.7
2491 Male, age 75, both hemispheres 12.3
2392 Female, age 94, both hemispheres 11.2
2292 Female, age 85, both hemispheres 10.6
Globus pallidus, externus
nTPM: 4.0
2395 Male, age 75, both hemispheres 6.8
2772 Female, age 79, unknown 3.9
2646 Male, age 61, right hemisphere 3.3
2567 Female, age 72, unknown 3.0
1996 Male, age 80, right hemisphere 2.7
Globus pallidus, internus
nTPM: 3.8
2483 Female, age 94, right hemisphere 8.5
2287 Male, age 75, right hemisphere 5.5
2778 Female, age 91, both hemispheres 3.3
2037 Male, age 80, right hemisphere 2.9
2566 Female, age 72, unknown 2.8
1818 Male, age 74, unknown 2.4
2111 Female, age 85, right hemisphere 1.3
Nucleus accumbens
nTPM: 8.3
1856 Female, age 91, right hemisphere 11.4
1783 Male, age 74, unknown 11.1
2286 Male, age 75, left hemisphere 9.1
1806 Female, age 85, left hemisphere 8.4
2698 Female, age 72, unknown 8.4
2391 Female, age 94, left hemisphere 7.3
2824 Male, age 61, right hemisphere 6.8
2732 Male, age 80, right hemisphere 3.6
Nucleus basalis of Meynert
nTPM: 7.8
2393 Male, age 80, right hemisphere 9.4
2821 Male, age 75, both hemispheres 9.4
2484 Female, age 94, left hemisphere 9.0
2569 Male, age 61, both hemispheres 3.5
Nucleus of the diagonal band
nTPM: 17.3
2029 Male, age 61, right hemisphere 22.3
2775 Male, age 80, right hemisphere 20.6
1812 Female, age 91, both hemispheres 20.1
2195 Female, age 85, both hemispheres 16.1
1979 Male, age 74, unknown 7.2
Olfactory tubercle
nTPM: 17.5
1846 Male, age 80, right hemisphere 19.7
1998 Female, age 91, both hemispheres 18.0
2487 Female, age 94, left hemisphere 17.1
2856 Male, age 75, right hemisphere 15.1
Putamen
nTPM: 11.4
2466 Female, age 79, unknown 16.7
1829 Male, age 74, unknown 14.0
2647 Male, age 75, left hemisphere 11.3
2482 Female, age 94, left hemisphere 10.4
1937 Female, age 91, right hemisphere 9.7
2489 Female, age 72, unknown 9.1
1838 Male, age 80, right hemisphere 8.9
Septal nuclei
nTPM: 13.0
2031 Female, age 72, unknown 21.8
1960 Male, age 74, unknown 18.5
2629 Female, age 94, right hemisphere 17.5
2009 Female, age 91, both hemispheres 14.9
2059 Female, age 85, both hemispheres 7.2
2199 Male, age 80, right hemisphere 6.4
2394 Male, age 61, left hemisphere 4.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.8
Samples: 246

Max nTPM: 67.0
Min nTPM: 6.7
Std nTPM: 8.7
Median nTPM: 16.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 67.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 58.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 47.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 40.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 39.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 39.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 38.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 37.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 36.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 36.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 35.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.1
Samples: 246

Max nTPM: 38.3
Min nTPM: 4.8
Std nTPM: 7.3
Median nTPM: 17.0
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 38.3
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 37.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 35.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 34.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 34.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 34.1
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 33.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 33.5
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 32.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 31.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 30.4
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Brain - Putamen (basal ganglia)
Average nTPM: 17.3
Samples: 205

Max nTPM: 50.9
Min nTPM: 7.1
Std nTPM: 7.6
Median nTPM: 14.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 50.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 42.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 41.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 40.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 36.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 35.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 33.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 33.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 33.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 32.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 32.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.1
FF:10164-103B2 76 years, female 59.1
Globus pallidus
Scaled Tags Per Million: 46.5
FF:10161-103A8 76 years, female 59.9
FF:10175-103C4 60 years, female 33.1
Nucleus accumbens
Scaled Tags Per Million: 108.9
FF:10037-101F1 23-56 years, mixed 108.9
Putamen
Scaled Tags Per Million: 56.1
FF:10176-103C5 60 years, female 56.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.4
Pig sample Sample description nTPM
Caudate
nTPM: 32.7
Samples: 4

Max nTPM: 35.6
Min nTPM: 31.1
Sample A Female 31.7
Sample B Female 32.3
Sample C Male 35.6
Sample D Male 31.1
Putamen
nTPM: 37.5
Samples: 4

Max nTPM: 55.7
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 38.1
Sample C Male 55.7
Sample D Male 34.7
Septum
nTPM: 25.0
Samples: 4

Max nTPM: 31.5
Min nTPM: 18.0
Sample A Female 29.6
Sample B Female 31.5
Sample C Male 18.0
Sample D Male 21.0
Ventral pallidum
nTPM: 28.8
Samples: 4

Max nTPM: 33.8
Min nTPM: 21.9
Sample A Female 32.5
Sample B Female 33.8
Sample C Male 21.9
Sample D Male 26.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 52.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 52.5
Samples: 4

Max nTPM: 55.4
Min nTPM: 50.0
Sample A Male 53.9
Sample B Male 50.5
Sample C Female 55.4
Sample D Female 50.0
Septum
nTPM: 35.8
Samples: 4

Max nTPM: 37.5
Min nTPM: 34.3
Sample A Male 34.3
Sample B Male 37.5
Sample C Female 36.4
Sample D Female 34.9
Ventral forebrain
nTPM: 45.2
Samples: 4

Max nTPM: 48.7
Min nTPM: 42.4
Sample A Male 46.5
Sample B Male 43.2
Sample C Female 48.7
Sample D Female 42.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71283450 Antisense, RP_050825_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
71283450 Antisense, RP_050825_01_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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