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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:227.4 nTPM
HPA:227.4 nTPM
GTEx:209.8 nTPM
FANTOM5:194.8 Scaled Tags Per Million
Pig:210.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 227.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 221.6
1981 Female, age 72, midline 238.5
2048 Male, age 55, midline 224.7
2816 Male, age 47, midline 216.9
2565 Male, age 75, midline 216.2
2194 Female, age 79, both hemispheres 211.9
Cervical spinal cord, dorsal horn
nTPM: 227.4
2296 Male, age 66, both hemispheres 257.7
2173 Female, age 72, unknown 250.8
2069 Male, age 47, both hemispheres 227.0
1877 Male, age 55, unknown 214.1
2297 Male, age 75, both hemispheres 212.3
2721 Male, age 90, both hemispheres 202.6
Cervical spinal cord, ventral horn
nTPM: 220.8
2098 Female, age 72, unknown 233.4
2480 Male, age 75, both hemispheres 230.3
2068 Male, age 55, unknown 223.0
2295 Male, age 66, both hemispheres 215.3
2809 Male, age 90, both hemispheres 214.8
2820 Female, age 79, both hemispheres 208.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 209.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 209.8
Samples: 159

Max nTPM: 450.6
Min nTPM: 82.8
Std nTPM: 62.0
Median nTPM: 202.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 450.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 397.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 346.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 345.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 345.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 329.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 322.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 320.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 314.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 308.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 306.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 306.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 301.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 300.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 298.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 292.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 290.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 289.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 288.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 285.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 282.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 280.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 274.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 272.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 271.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 269.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 267.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 265.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 261.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 260.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 257.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 257.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 255.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 254.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 253.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 251.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 249.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 245.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 245.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 245.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 244.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 244.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 243.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 242.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 242.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 239.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 239.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 238.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 237.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 235.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 234.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 234.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 232.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 232.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 231.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 231.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 230.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 230.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 229.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 223.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 221.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 218.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 216.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 215.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 214.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 214.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 213.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 213.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 213.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 212.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 212.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 210.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 210.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 209.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 209.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 207.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 207.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 207.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 203.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 202.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 201.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 201.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 200.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 200.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 199.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 197.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 195.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 194.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 194.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 194.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 193.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 193.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 193.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 192.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 192.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 190.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 189.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 188.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 188.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 188.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 185.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 184.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 184.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 182.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 182.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 182.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 181.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 180.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 178.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 177.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 177.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 176.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 174.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 173.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 172.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 170.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 169.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 169.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 167.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 164.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 164.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 164.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 163.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 161.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 159.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 158.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 156.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 156.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 156.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 154.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 154.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 153.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 153.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 151.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 148.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 148.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 147.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 146.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 143.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 140.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 139.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 139.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 138.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 137.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 135.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 133.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 132.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 131.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 119.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 117.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 109.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 108.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 104.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 103.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 103.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 100.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 97.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 91.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 82.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 194.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 194.8
FF:10181-103D1 60 years, female 245.2
FF:10159-103A6 76 years, female 144.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 210.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 137.0
Samples: 4

Max nTPM: 159.7
Min nTPM: 126.3
Sample A Female 159.7
Sample B Female 126.3
Sample C Male 128.4
Sample D Male 133.6
Ventral spinal cord
nTPM: 210.8
Samples: 4

Max nTPM: 249.3
Min nTPM: 165.8
Sample A Female 218.9
Sample B Female 249.3
Sample C Male 209.2
Sample D Male 165.8

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