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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:73.7 nTPM
HPA:73.7 nTPM
GTEx:80.9 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:85.7 nTPM
Allen mouse:2.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 73.7
Sample id Sample description nTPM
Amygdala
nTPM: 73.7
2695 Female, age 67, right hemisphere 83.0
2814 Male, age 76, right hemisphere 79.5
1987 Female, age 91, left hemisphere 71.0
2514 Male, age 75, right hemisphere 70.2
2517 Female, age 94, left hemisphere 65.0
Basal amygdala
nTPM: 67.2
2609 Male, age 75, right hemisphere 75.1
1955 Male, age 76, both hemispheres 68.0
2827 Female, age 67, right hemisphere 67.8
2110 Male, age 80, left hemisphere 65.6
2685 Female, age 94, left hemisphere 64.8
2243 Female, age 91, right hemisphere 62.1
Central amygdala
nTPM: 71.5
1905 Male, age 76, both hemispheres 81.3
2826 Female, age 94, left hemisphere 76.2
2515 Male, age 75, right hemisphere 75.6
2239 Male, age 80, left hemisphere 62.9
2701 Female, age 91, right hemisphere 61.6
Corticomedial amygdala
nTPM: 64.9
2428 Male, age 75, right hemisphere 74.1
2829 Male, age 80, left hemisphere 70.9
2240 Male, age 76, both hemispheres 64.0
2429 Female, age 94, left hemisphere 63.6
2242 Female, age 91, right hemisphere 60.3
2535 Female, age 67, right hemisphere 56.7
Lateral amygdala
nTPM: 70.5
1883 Male, age 76, both hemispheres 79.6
2516 Male, age 75, right hemisphere 79.3
2830 Female, age 67, right hemisphere 73.1
2534 Female, age 94, left hemisphere 68.9
2256 Male, age 80, left hemisphere 61.8
2255 Female, age 91, right hemisphere 60.4
Stria terminalis, bed nucleus
nTPM: 63.2
1974 Female, age 91, both hemispheres 68.1
2201 Male, age 74, unknown 61.0
2486 Female, age 94, both hemispheres 60.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 80.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 80.9
Samples: 152

Max nTPM: 164.4
Min nTPM: 39.9
Std nTPM: 19.2
Median nTPM: 80.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 164.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 135.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 131.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 125.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 123.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 120.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 118.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 113.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 111.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 111.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 109.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 107.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 106.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 105.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 103.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 102.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 99.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 99.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 98.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 97.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 96.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 96.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 96.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 96.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 96.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 95.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 95.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 94.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 93.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 93.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 93.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 92.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 92.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 92.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 92.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 91.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 91.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 90.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 89.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 89.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 88.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 87.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 87.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 87.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 86.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 86.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 86.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 85.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 85.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 85.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 85.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 84.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 83.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 83.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 83.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 83.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 83.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 82.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 82.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 82.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 82.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 82.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 82.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 81.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 81.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 81.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 81.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 81.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 81.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 81.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 80.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 80.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 80.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 80.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 80.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 79.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 79.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 78.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 78.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 78.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 78.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 78.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 77.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 76.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 76.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 75.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 75.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 75.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 75.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 75.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 74.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 73.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 73.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 72.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 72.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 71.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 71.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 70.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 70.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 70.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 69.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 69.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 69.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 69.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 68.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 68.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 68.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 67.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 67.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 66.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 66.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 65.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 65.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 65.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 64.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 64.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 64.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 64.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 63.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 63.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 63.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 63.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 63.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 63.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 62.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 61.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 61.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 60.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 59.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 59.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 59.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 59.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 58.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 56.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 55.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 54.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 53.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 53.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 52.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 49.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 49.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 49.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 46.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 43.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 45.9
FF:10151-102I7 76 years, female 45.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.6
Pig sample Sample description nTPM
Amygdala
nTPM: 16.6
Samples: 4

Max nTPM: 18.0
Min nTPM: 15.2
Sample A Female 15.8
Sample B Female 17.3
Sample C Male 18.0
Sample D Male 15.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 85.7
Samples: 4

Max nTPM: 96.0
Min nTPM: 79.5
Sample A Male 82.8
Sample B Male 84.3
Sample C Female 96.0
Sample D Female 79.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
68269302 Antisense, RP_041129_01_F10, Mouse strain C57BL/6J (56 days, male) 2.5

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