HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:68.4 nTPM
HPA:68.4 nTPM
GTEx:68.7 nTPM
FANTOM5:58.9 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:86.7 nTPM
Allen mouse:1.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 68.4
Sample id Sample description nTPM
Hippocampus
nTPM: 67.0
1898 Male, age 80, left hemisphere 77.0
1911 Female, age 85, right hemisphere 66.6
2529 Female, age 94, left hemisphere 66.5
2148 Female, age 91, left hemisphere 64.5
1855 Male, age 76, left hemisphere 64.4
2621 Female, age 67, right hemisphere 63.0
Dentate gyrus
nTPM: 65.3
1927 Female, age 91, both hemispheres 70.8
2010 Male, age 76, both hemispheres 67.9
2530 Female, age 94, left hemisphere 67.8
2528 Male, age 74, both hemispheres 67.6
2246 Female, age 85, both hemispheres 61.0
2531 Female, age 67, both hemispheres 56.5
Entorhinal gyrus
nTPM: 67.0
2117 Female, age 91, right hemisphere 71.8
1938 Female, age 85, left hemisphere 70.7
2686 Male, age 75, right hemisphere 70.2
1787 Male, age 76, left hemisphere 64.1
2764 Male, age 80, right hemisphere 63.6
2613 Female, age 94, left hemisphere 61.8
Hippocampus, CA1
nTPM: 67.9
2749 Male, age 80, left hemisphere 77.8
2082 Female, age 91, right hemisphere 66.2
2527 Male, age 74, both hemispheres 65.9
1873 Female, age 85, both hemispheres 65.7
2045 Male, age 76, both hemispheres 64.0
Hippocampus, CA2
nTPM: 68.4
1892 Male, age 76, both hemispheres 74.4
1963 Male, age 80, left hemisphere 72.1
2249 Male, age 74, both hemispheres 71.7
1940 Female, age 85, left hemisphere 66.6
2113 Female, age 91, right hemisphere 64.2
2437 Female, age 94, left hemisphere 61.5
Hippocampus, CA3
nTPM: 67.5
2436 Male, age 74, both hemispheres 74.6
2137 Male, age 80, left hemisphere 71.8
1867 Male, age 76, both hemispheres 71.7
1891 Female, age 85, both hemispheres 68.9
2620 Female, age 94, left hemisphere 60.0
2861 Female, age 67, both hemispheres 58.2
Parahippocampal cortex
nTPM: 65.8
1850 Male, age 80, both hemispheres 71.1
1990 Female, age 91, right hemisphere 69.6
1933 Female, age 85, both hemispheres 68.9
2692 Male, age 74, both hemispheres 67.4
2693 Female, age 94, both hemispheres 66.1
2018 Male, age 76, both hemispheres 65.8
2250 Female, age 67, right hemisphere 64.6
2622 Female, age 67, right hemisphere 62.6
2532 Female, age 72, left hemisphere 62.2
2245 Female, age 91, both hemispheres 59.9
Perirhinal gyrus
nTPM: 66.7
1847 Female, age 91, left hemisphere 71.7
1841 Female, age 85, right hemisphere 71.1
1794 Male, age 80, right hemisphere 66.9
2848 Male, age 76, right hemisphere 64.5
2521 Female, age 94, right hemisphere 59.2
Subiculum
nTPM: 65.4
1901 Male, age 80, both hemispheres 70.1
1977 Female, age 85, both hemispheres 68.8
2729 Female, age 91, right hemisphere 65.7
2619 Male, age 74, both hemispheres 64.1
2042 Male, age 76, both hemispheres 62.3
2438 Female, age 94, left hemisphere 61.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.7
Samples: 197

Max nTPM: 118.7
Min nTPM: 38.1
Std nTPM: 13.7
Median nTPM: 67.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 118.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 105.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 103.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 101.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 100.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 98.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 95.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 94.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 91.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 91.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 91.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 58.9
FF:10169-103B7 60 years, female 70.1
FF:10153-102I9 76 years, female 47.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 18.2
Samples: 4

Max nTPM: 21.0
Min nTPM: 14.3
Sample A Female 20.4
Sample B Female 17.1
Sample C Male 21.0
Sample D Male 14.3
Entorhinal cortex
nTPM: 16.9
Samples: 4

Max nTPM: 20.9
Min nTPM: 14.1
Sample A Female 15.5
Sample B Female 20.9
Sample C Male 17.1
Sample D Male 14.1
Subiculum
nTPM: 16.0
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.2
Sample A Female 15.9
Sample B Female 17.0
Sample C Male 14.2
Sample D Male 16.9
Ventral hippocampus
nTPM: 17.8
Samples: 4

Max nTPM: 20.0
Min nTPM: 15.7
Sample A Female 18.8
Sample B Female 15.7
Sample C Male 20.0
Sample D Male 16.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 71.6
Samples: 4

Max nTPM: 84.4
Min nTPM: 62.2
Sample A Male 68.9
Sample B Male 71.0
Sample C Female 84.4
Sample D Female 62.2
Hippocampal formation
nTPM: 86.7
Samples: 4

Max nTPM: 97.1
Min nTPM: 70.5
Sample A Male 92.9
Sample B Male 70.5
Sample C Female 97.1
Sample D Female 86.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.8
68269302 Antisense, RP_041129_01_F10, Mouse strain C57BL/6J (56 days, male) 1.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.