MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:173.3 nTPM
HPA:173.3 nTPM
GTEx:190.2 nTPM
FANTOM5:117.9 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:79.7 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 173.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 165.3
2666 Male, age 74, left hemisphere 182.5
1870 Female, age 42, unknown 172.5
1833 Male, age 53, unknown 169.0
2411 Female, age 72, unknown 166.7
1827 Male, age 72, unknown 165.1
1830 Male, age 51, unknown 163.7
2828 Female, age 72, unknown 161.1
2219 Male, age 76, both hemispheres 160.5
2019 Male, age 18, unknown 156.7
2586 Male, age 75, left hemisphere 154.8
Dorsal raphe nucleus
nTPM: 160.5
2750 Male, age 76, both hemispheres 165.8
1828 Male, age 53, unknown 163.7
2047 Male, age 72, unknown 159.5
2016 Female, age 72, unknown 157.5
2298 Female, age 72, unknown 155.7
Inferior colliculus
nTPM: 160.8
2849 Male, age 72, unknown 163.3
1890 Male, age 53, unknown 162.4
2097 Female, age 72, unknown 159.1
1848 Female, age 42, unknown 158.5
Median raphe nucleus
nTPM: 173.3
2220 Male, age 76, midline 173.3
Pedunculopontine tegmental nucleus
nTPM: 167.0
2334 Male, age 80, both hemispheres 171.9
2338 Male, age 61, both hemispheres 164.8
1921 Female, age 85, both hemispheres 164.2
Periaquaductal grey, anterior
nTPM: 157.6
1947 Male, age 18, unknown 161.0
1795 Male, age 51, unknown 159.5
2502 Female, age 75, unknown 152.4
Periaquaductal grey, dorsal
nTPM: 157.4
2850 Male, age 76, both hemispheres 160.4
1831 Male, age 72, unknown 157.2
1840 Male, age 53, unknown 157.2
2464 Female, age 72, unknown 154.9
Periaquaductal grey, lateral
nTPM: 155.1
2053 Male, age 18, unknown 157.1
2140 Male, age 76, both hemispheres 156.1
2272 Male, age 74, both hemispheres 152.0
Pretectal area
nTPM: 159.0
1817 Female, age 42, unknown 165.1
2825 Male, age 18, unknown 163.3
1815 Male, age 53, unknown 162.5
1944 Female, age 72, unknown 162.1
2007 Male, age 72, unknown 162.0
1816 Male, age 51, unknown 159.5
2224 Female, age 72, unknown 159.1
2407 Male, age 75, both hemispheres 157.6
2667 Female, age 75, unknown 155.0
2316 Male, age 76, right hemisphere 153.0
2273 Male, age 74, both hemispheres 150.2
Red nucleus
nTPM: 169.9
2725 Female, age 75, unknown 183.4
2503 Female, age 72, unknown 174.3
1954 Female, age 42, unknown 172.7
1821 Female, age 72, unknown 172.3
1904 Male, age 53, unknown 170.0
2584 Male, age 75, left hemisphere 169.2
2227 Male, age 72, unknown 168.9
2769 Male, age 72, unknown 168.8
1865 Male, age 51, unknown 167.5
2588 Male, age 74, left hemisphere 166.0
2823 Male, age 76, right hemisphere 164.2
2785 Male, age 18, unknown 161.9
Substantia nigra
nTPM: 166.8
1916 Female, age 42, unknown 177.3
2699 Male, age 18, unknown 174.1
1851 Male, age 51, unknown 169.7
2665 Male, age 74, both hemispheres 169.2
1889 Female, age 72, unknown 168.1
2583 Male, age 75, right hemisphere 164.5
2241 Male, age 72, unknown 163.7
2409 Female, age 72, unknown 163.4
2590 Female, age 75, unknown 160.0
1941 Male, age 53, unknown 158.1
Superior colliculus
nTPM: 159.2
2587 Male, age 74, left hemisphere 167.0
2668 Female, age 75, unknown 166.3
1895 Male, age 76, right hemisphere 161.1
1796 Male, age 53, unknown 160.1
1913 Female, age 42, unknown 159.2
1839 Male, age 51, unknown 158.4
1995 Male, age 72, unknown 156.9
2261 Male, age 18, unknown 156.6
2087 Female, age 72, unknown 156.3
2664 Male, age 75, both hemispheres 149.9
Ventral tegmental area
nTPM: 165.4
2218 Male, age 76, both hemispheres 171.0
1915 Female, age 42, unknown 168.9
2410 Female, age 72, unknown 167.5
2223 Female, age 72, unknown 164.4
1942 Male, age 51, unknown 161.7
2021 Male, age 53, unknown 158.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 190.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 190.2
Samples: 139

Max nTPM: 427.7
Min nTPM: 86.3
Std nTPM: 53.7
Median nTPM: 184.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 427.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 327.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 313.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 310.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 307.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 299.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 291.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 288.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 275.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 271.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 268.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.9
FF:10158-103A5 76 years, female 117.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.3
Pig sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 13.0
Min nTPM: 7.4
Sample A Female 11.4
Sample B Female 13.0
Sample C Male 7.4
Sample D Male 8.5
Periaqueductal gray
nTPM: 10.3
Samples: 3

Max nTPM: 11.4
Min nTPM: 8.7
Sample B Female 10.9
Sample C Male 11.4
Sample D Male 8.7
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 13.7
Min nTPM: 6.9
Sample A Female 13.7
Sample B Female 7.2
Sample C Male 11.6
Sample D Male 6.9
Superior colliculi
nTPM: 8.4
Samples: 4

Max nTPM: 10.7
Min nTPM: 5.3
Sample A Female 10.7
Sample B Female 5.3
Sample C Male 8.4
Sample D Male 9.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.8
Samples: 4

Max nTPM: 83.8
Min nTPM: 74.9
Sample A Male 80.2
Sample B Male 80.1
Sample C Female 74.9
Sample D Female 83.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
68666601 Antisense, RP_050126_02_E12, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.