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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:165.8 nTPM
HPA:165.8 nTPM
GTEx:194.9 nTPM
FANTOM5:74.8 Scaled Tags Per Million
Pig:9.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 165.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 162.1
1981 Female, age 72, midline 166.2
2194 Female, age 79, both hemispheres 165.8
2816 Male, age 47, midline 163.3
2565 Male, age 75, midline 160.3
2048 Male, age 55, midline 154.9
Cervical spinal cord, dorsal horn
nTPM: 161.1
2296 Male, age 66, both hemispheres 171.3
2173 Female, age 72, unknown 171.1
2069 Male, age 47, both hemispheres 159.1
1877 Male, age 55, unknown 158.6
2297 Male, age 75, both hemispheres 154.1
2721 Male, age 90, both hemispheres 152.4
Cervical spinal cord, ventral horn
nTPM: 165.8
2480 Male, age 75, both hemispheres 175.4
2068 Male, age 55, unknown 168.4
2809 Male, age 90, both hemispheres 167.8
2820 Female, age 79, both hemispheres 166.6
2295 Male, age 66, both hemispheres 160.8
2098 Female, age 72, unknown 155.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 194.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 194.9
Samples: 159

Max nTPM: 367.9
Min nTPM: 70.1
Std nTPM: 55.1
Median nTPM: 193.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 367.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 337.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 335.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 302.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 301.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 297.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 297.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 292.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 290.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 281.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 280.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 279.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 279.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 278.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 274.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 272.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 269.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 268.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 266.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 262.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 260.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 258.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 258.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 254.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 251.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 247.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 245.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 245.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 244.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 240.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 240.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 236.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 235.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 233.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 232.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 230.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 230.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 228.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 228.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 226.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 224.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 224.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 223.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 223.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 222.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 222.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 221.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 221.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 221.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 220.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 219.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 219.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 217.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 217.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 216.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 216.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 216.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 214.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 212.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 212.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 211.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 210.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 209.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 208.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 207.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 206.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 206.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 204.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 204.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 202.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 201.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 199.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 198.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 198.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 197.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 196.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 196.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 195.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 194.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 193.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 193.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 193.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 193.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 192.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 192.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 192.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 189.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 188.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 186.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 186.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 181.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 180.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 180.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 178.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 178.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 176.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 176.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 175.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 175.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 174.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 174.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 174.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 174.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 172.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 172.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 171.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 171.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 168.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 168.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 168.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 167.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 162.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 160.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 159.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 158.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 154.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 153.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 151.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 151.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 151.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 150.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 149.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 148.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 148.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 147.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 146.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 146.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 142.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 141.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 140.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 140.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 138.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 136.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 134.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 133.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 133.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 132.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 130.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 129.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 128.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 127.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 127.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 127.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 125.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 124.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 123.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 122.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 122.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 122.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 121.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 120.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 109.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 104.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 104.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 98.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 97.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 85.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 85.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 70.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 74.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 74.8
FF:10181-103D1 60 years, female 83.1
FF:10159-103A6 76 years, female 66.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 8.5
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.6
Sample A Female 9.1
Sample B Female 7.6
Sample C Male 8.6
Sample D Male 8.5
Ventral spinal cord
nTPM: 9.1
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.3
Sample A Female 8.4
Sample B Female 8.3
Sample C Male 11.3
Sample D Male 8.4

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