MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:71.3 nTPM
HPA:71.3 nTPM
GTEx:15.0 nTPM
FANTOM5:36.4 Scaled Tags Per Million
Pig:88.9 nTPM
Mouse:16.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
1827 Male, age 72, unknown 40.9
2019 Male, age 18, unknown 35.6
2828 Female, age 72, unknown 34.4
2666 Male, age 74, left hemisphere 16.3
2586 Male, age 75, left hemisphere 12.1
1870 Female, age 42, unknown 12.0
2219 Male, age 76, both hemispheres 8.7
2411 Female, age 72, unknown 6.9
1830 Male, age 51, unknown 6.0
1833 Male, age 53, unknown 5.4
Dorsal raphe nucleus
nTPM: 7.2
2298 Female, age 72, unknown 11.0
2750 Male, age 76, both hemispheres 11.0
2016 Female, age 72, unknown 5.0
1828 Male, age 53, unknown 4.6
2047 Male, age 72, unknown 4.3
Inferior colliculus
nTPM: 11.0
2097 Female, age 72, unknown 21.3
1890 Male, age 53, unknown 12.6
1848 Female, age 42, unknown 5.6
2849 Male, age 72, unknown 4.4
Median raphe nucleus
nTPM: 9.7
2220 Male, age 76, midline 9.7
Pedunculopontine tegmental nucleus
nTPM: 11.1
2338 Male, age 61, both hemispheres 16.0
2334 Male, age 80, both hemispheres 8.8
1921 Female, age 85, both hemispheres 8.3
Periaquaductal grey, anterior
nTPM: 26.8
1795 Male, age 51, unknown 60.1
1947 Male, age 18, unknown 10.1
2502 Female, age 75, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 12.6
1831 Male, age 72, unknown 31.1
2464 Female, age 72, unknown 7.3
2850 Male, age 76, both hemispheres 6.7
1840 Male, age 53, unknown 5.1
Periaquaductal grey, lateral
nTPM: 11.4
2053 Male, age 18, unknown 14.8
2272 Male, age 74, both hemispheres 12.3
2140 Male, age 76, both hemispheres 7.2
Pretectal area
nTPM: 71.3
1816 Male, age 51, unknown 207.2
1815 Male, age 53, unknown 151.0
1817 Female, age 42, unknown 123.9
1944 Female, age 72, unknown 111.5
2007 Male, age 72, unknown 92.0
2667 Female, age 75, unknown 45.8
2273 Male, age 74, both hemispheres 17.1
2407 Male, age 75, both hemispheres 10.8
2316 Male, age 76, right hemisphere 8.8
2224 Female, age 72, unknown 8.4
2825 Male, age 18, unknown 8.0
Red nucleus
nTPM: 9.2
2785 Male, age 18, unknown 35.5
2725 Female, age 75, unknown 11.4
2584 Male, age 75, left hemisphere 9.6
2503 Female, age 72, unknown 7.7
2823 Male, age 76, right hemisphere 7.5
2588 Male, age 74, left hemisphere 7.4
1865 Male, age 51, unknown 6.1
1904 Male, age 53, unknown 6.1
1954 Female, age 42, unknown 5.4
1821 Female, age 72, unknown 4.8
2769 Male, age 72, unknown 4.2
2227 Male, age 72, unknown 4.1
Substantia nigra
nTPM: 18.0
1889 Female, age 72, unknown 61.9
1916 Female, age 42, unknown 23.7
2590 Female, age 75, unknown 15.8
2409 Female, age 72, unknown 14.9
1851 Male, age 51, unknown 14.7
1941 Male, age 53, unknown 13.1
2583 Male, age 75, right hemisphere 13.1
2665 Male, age 74, both hemispheres 12.4
2241 Male, age 72, unknown 5.6
2699 Male, age 18, unknown 4.7
Superior colliculus
nTPM: 34.4
2087 Female, age 72, unknown 83.4
1796 Male, age 53, unknown 65.8
1913 Female, age 42, unknown 60.4
1995 Male, age 72, unknown 55.4
2261 Male, age 18, unknown 32.2
2668 Female, age 75, unknown 13.9
2587 Male, age 74, left hemisphere 10.1
2664 Male, age 75, both hemispheres 8.9
1895 Male, age 76, right hemisphere 7.4
1839 Male, age 51, unknown 6.0
Ventral tegmental area
nTPM: 10.6
2410 Female, age 72, unknown 20.6
1915 Female, age 42, unknown 11.5
2218 Male, age 76, both hemispheres 10.6
2021 Male, age 53, unknown 7.2
1942 Male, age 51, unknown 7.1
2223 Female, age 72, unknown 6.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.0
Samples: 139

Max nTPM: 62.1
Min nTPM: 1.3
Std nTPM: 11.9
Median nTPM: 11.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 62.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 50.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 49.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 49.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 46.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 41.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 41.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 36.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 36.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 35.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.4
FF:10158-103A5 76 years, female 36.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 88.9
Pig sample Sample description nTPM
Midbrain
nTPM: 76.5
Samples: 4

Max nTPM: 287.5
Min nTPM: 1.8
Sample A Female 2.6
Sample B Female 1.8
Sample C Male 287.5
Sample D Male 13.9
Periaqueductal gray
nTPM: 1.5
Samples: 3

Max nTPM: 1.6
Min nTPM: 1.2
Sample B Female 1.2
Sample C Male 1.6
Sample D Male 1.6
Substantia nigra
nTPM: 4.0
Samples: 4

Max nTPM: 7.2
Min nTPM: 1.5
Sample A Female 4.4
Sample B Female 2.9
Sample C Male 7.2
Sample D Male 1.5
Superior colliculi
nTPM: 88.9
Samples: 4

Max nTPM: 239.4
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 53.6
Sample C Male 239.4
Sample D Male 52.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 19.8
Min nTPM: 12.1
Sample A Male 17.6
Sample B Male 12.1
Sample C Female 19.8
Sample D Female 16.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
1568 Antisense, RP_040428_01_C02, Mouse strain C57BL/6J (56 days, male) 0.3
1567 Antisense, RP_040428_01_C02, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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