MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.7 nTPM
HPA:27.7 nTPM
GTEx:29.2 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:46.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.5
1870 Female, age 42, unknown 27.1
2019 Male, age 18, unknown 26.7
1827 Male, age 72, unknown 26.5
1833 Male, age 53, unknown 26.0
2411 Female, age 72, unknown 25.9
2219 Male, age 76, both hemispheres 25.3
1830 Male, age 51, unknown 25.2
2666 Male, age 74, left hemisphere 25.1
2828 Female, age 72, unknown 24.9
2586 Male, age 75, left hemisphere 22.4
Dorsal raphe nucleus
nTPM: 26.3
2298 Female, age 72, unknown 28.6
1828 Male, age 53, unknown 26.7
2750 Male, age 76, both hemispheres 26.1
2016 Female, age 72, unknown 25.1
2047 Male, age 72, unknown 25.0
Inferior colliculus
nTPM: 26.4
2849 Male, age 72, unknown 27.1
2097 Female, age 72, unknown 26.6
1890 Male, age 53, unknown 25.9
1848 Female, age 42, unknown 25.8
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Pedunculopontine tegmental nucleus
nTPM: 27.7
2338 Male, age 61, both hemispheres 28.8
2334 Male, age 80, both hemispheres 28.0
1921 Female, age 85, both hemispheres 26.5
Periaquaductal grey, anterior
nTPM: 25.5
1947 Male, age 18, unknown 26.0
1795 Male, age 51, unknown 25.4
2502 Female, age 75, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 25.4
2850 Male, age 76, both hemispheres 27.2
1840 Male, age 53, unknown 25.3
1831 Male, age 72, unknown 25.2
2464 Female, age 72, unknown 23.8
Periaquaductal grey, lateral
nTPM: 26.6
2272 Male, age 74, both hemispheres 28.8
2140 Male, age 76, both hemispheres 25.6
2053 Male, age 18, unknown 25.4
Pretectal area
nTPM: 26.9
1816 Male, age 51, unknown 28.3
1817 Female, age 42, unknown 27.9
2667 Female, age 75, unknown 27.9
2007 Male, age 72, unknown 27.5
2224 Female, age 72, unknown 27.4
1944 Female, age 72, unknown 27.2
2273 Male, age 74, both hemispheres 26.8
1815 Male, age 53, unknown 26.3
2825 Male, age 18, unknown 26.1
2316 Male, age 76, right hemisphere 25.7
2407 Male, age 75, both hemispheres 24.7
Red nucleus
nTPM: 26.2
1821 Female, age 72, unknown 28.6
2503 Female, age 72, unknown 26.9
2725 Female, age 75, unknown 26.8
1954 Female, age 42, unknown 26.5
2823 Male, age 76, right hemisphere 26.5
2227 Male, age 72, unknown 26.3
2785 Male, age 18, unknown 26.3
1865 Male, age 51, unknown 26.2
1904 Male, age 53, unknown 25.9
2769 Male, age 72, unknown 25.4
2584 Male, age 75, left hemisphere 24.4
2588 Male, age 74, left hemisphere 24.2
Substantia nigra
nTPM: 26.8
1916 Female, age 42, unknown 29.2
1889 Female, age 72, unknown 28.5
1941 Male, age 53, unknown 28.4
2409 Female, age 72, unknown 28.1
1851 Male, age 51, unknown 27.4
2699 Male, age 18, unknown 27.2
2241 Male, age 72, unknown 26.9
2590 Female, age 75, unknown 24.7
2665 Male, age 74, both hemispheres 24.2
2583 Male, age 75, right hemisphere 23.4
Superior colliculus
nTPM: 25.7
1895 Male, age 76, right hemisphere 27.6
2587 Male, age 74, left hemisphere 26.8
2668 Female, age 75, unknown 26.6
1913 Female, age 42, unknown 26.2
1796 Male, age 53, unknown 25.9
2087 Female, age 72, unknown 25.7
1839 Male, age 51, unknown 25.2
2261 Male, age 18, unknown 25.0
1995 Male, age 72, unknown 24.9
2664 Male, age 75, both hemispheres 23.4
Ventral tegmental area
nTPM: 26.4
1915 Female, age 42, unknown 27.5
2410 Female, age 72, unknown 27.5
2218 Male, age 76, both hemispheres 27.1
2223 Female, age 72, unknown 26.8
1942 Male, age 51, unknown 25.1
2021 Male, age 53, unknown 24.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.2
Samples: 139

Max nTPM: 47.8
Min nTPM: 15.2
Std nTPM: 5.3
Median nTPM: 28.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 47.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 43.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 39.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 38.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 38.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 37.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 37.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.9
FF:10158-103A5 76 years, female 37.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 14.7
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 14.6
Sample C Male 14.7
Sample D Male 13.8
Periaqueductal gray
nTPM: 14.5
Samples: 3

Max nTPM: 17.0
Min nTPM: 12.9
Sample B Female 13.7
Sample C Male 17.0
Sample D Male 12.9
Substantia nigra
nTPM: 14.3
Samples: 4

Max nTPM: 16.9
Min nTPM: 12.2
Sample A Female 16.9
Sample B Female 12.8
Sample C Male 15.3
Sample D Male 12.2
Superior colliculi
nTPM: 15.0
Samples: 4

Max nTPM: 16.9
Min nTPM: 12.8
Sample A Female 16.9
Sample B Female 12.8
Sample C Male 16.0
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 51.6
Min nTPM: 41.8
Sample A Male 47.8
Sample B Male 42.8
Sample C Female 41.8
Sample D Female 51.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71020802 Antisense, RP_050505_01_G09, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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