MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.0 nTPM
HPA:29.0 nTPM
GTEx:30.2 nTPM
FANTOM5:46.7 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:14.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.8
1830 Male, age 51, unknown 37.1
2411 Female, age 72, unknown 36.8
1833 Male, age 53, unknown 34.0
2219 Male, age 76, both hemispheres 31.8
1870 Female, age 42, unknown 25.2
1827 Male, age 72, unknown 22.7
2019 Male, age 18, unknown 22.2
2828 Female, age 72, unknown 18.7
2666 Male, age 74, left hemisphere 16.8
2586 Male, age 75, left hemisphere 2.6
Dorsal raphe nucleus
nTPM: 20.5
2750 Male, age 76, both hemispheres 34.8
2047 Male, age 72, unknown 22.8
2016 Female, age 72, unknown 18.7
1828 Male, age 53, unknown 15.3
2298 Female, age 72, unknown 10.9
Inferior colliculus
nTPM: 22.5
1890 Male, age 53, unknown 24.6
2849 Male, age 72, unknown 23.2
1848 Female, age 42, unknown 22.2
2097 Female, age 72, unknown 20.0
Median raphe nucleus
nTPM: 17.0
2220 Male, age 76, midline 17.0
Pedunculopontine tegmental nucleus
nTPM: 27.8
1921 Female, age 85, both hemispheres 32.3
2338 Male, age 61, both hemispheres 26.8
2334 Male, age 80, both hemispheres 24.2
Periaquaductal grey, anterior
nTPM: 15.4
1947 Male, age 18, unknown 22.7
1795 Male, age 51, unknown 11.8
2502 Female, age 75, unknown 11.6
Periaquaductal grey, dorsal
nTPM: 17.2
2464 Female, age 72, unknown 24.1
1831 Male, age 72, unknown 18.7
2850 Male, age 76, both hemispheres 16.7
1840 Male, age 53, unknown 9.4
Periaquaductal grey, lateral
nTPM: 25.2
2140 Male, age 76, both hemispheres 28.1
2272 Male, age 74, both hemispheres 25.7
2053 Male, age 18, unknown 21.8
Pretectal area
nTPM: 20.9
2224 Female, age 72, unknown 29.1
2407 Male, age 75, both hemispheres 29.0
2273 Male, age 74, both hemispheres 26.0
2667 Female, age 75, unknown 25.2
2825 Male, age 18, unknown 25.0
2316 Male, age 76, right hemisphere 21.7
1944 Female, age 72, unknown 19.2
1815 Male, age 53, unknown 18.5
1817 Female, age 42, unknown 14.9
2007 Male, age 72, unknown 12.9
1816 Male, age 51, unknown 8.5
Red nucleus
nTPM: 29.0
2823 Male, age 76, right hemisphere 41.0
1904 Male, age 53, unknown 37.3
1865 Male, age 51, unknown 34.5
1954 Female, age 42, unknown 31.4
2588 Male, age 74, left hemisphere 31.2
2503 Female, age 72, unknown 30.2
2769 Male, age 72, unknown 27.3
2785 Male, age 18, unknown 26.6
1821 Female, age 72, unknown 24.6
2725 Female, age 75, unknown 24.6
2227 Male, age 72, unknown 24.0
2584 Male, age 75, left hemisphere 15.7
Substantia nigra
nTPM: 19.4
2241 Male, age 72, unknown 27.2
1941 Male, age 53, unknown 23.9
2590 Female, age 75, unknown 23.9
2409 Female, age 72, unknown 22.2
2665 Male, age 74, both hemispheres 20.2
2583 Male, age 75, right hemisphere 18.7
2699 Male, age 18, unknown 18.0
1889 Female, age 72, unknown 15.7
1851 Male, age 51, unknown 14.3
1916 Female, age 42, unknown 9.9
Superior colliculus
nTPM: 24.1
1913 Female, age 42, unknown 34.4
1895 Male, age 76, right hemisphere 32.4
2587 Male, age 74, left hemisphere 29.1
1995 Male, age 72, unknown 25.5
1839 Male, age 51, unknown 24.7
2668 Female, age 75, unknown 22.3
2087 Female, age 72, unknown 20.3
1796 Male, age 53, unknown 19.6
2261 Male, age 18, unknown 19.2
2664 Male, age 75, both hemispheres 13.9
Ventral tegmental area
nTPM: 22.6
1942 Male, age 51, unknown 28.7
2218 Male, age 76, both hemispheres 26.0
2223 Female, age 72, unknown 24.9
2410 Female, age 72, unknown 23.9
2021 Male, age 53, unknown 19.7
1915 Female, age 42, unknown 12.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.2
Samples: 139

Max nTPM: 62.4
Min nTPM: 10.3
Std nTPM: 10.0
Median nTPM: 30.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 62.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 56.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 52.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 52.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 50.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 49.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 48.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 47.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 47.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.7
FF:10158-103A5 76 years, female 46.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.0
Sample A Female 14.3
Sample B Female 11.0
Sample C Male 13.4
Sample D Male 13.4
Periaqueductal gray
nTPM: 12.5
Samples: 3

Max nTPM: 13.0
Min nTPM: 11.6
Sample B Female 11.6
Sample C Male 12.9
Sample D Male 13.0
Substantia nigra
nTPM: 12.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 12.0
Sample A Female 12.0
Sample B Female 12.4
Sample C Male 12.2
Sample D Male 13.4
Superior colliculi
nTPM: 12.7
Samples: 4

Max nTPM: 13.6
Min nTPM: 11.8
Sample A Female 12.9
Sample B Female 12.6
Sample C Male 11.8
Sample D Male 13.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.5
Sample A Male 14.0
Sample B Male 15.0
Sample C Female 15.3
Sample D Female 13.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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