MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.8 nTPM
HPA:44.8 nTPM
GTEx:72.6 nTPM
FANTOM5:54.1 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:0.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.7
1870 Female, age 42, unknown 42.2
2828 Female, age 72, unknown 41.8
2411 Female, age 72, unknown 41.6
1827 Male, age 72, unknown 41.3
2019 Male, age 18, unknown 41.2
1833 Male, age 53, unknown 40.8
1830 Male, age 51, unknown 40.7
2666 Male, age 74, left hemisphere 39.6
2219 Male, age 76, both hemispheres 39.1
2586 Male, age 75, left hemisphere 39.1
Dorsal raphe nucleus
nTPM: 43.7
2298 Female, age 72, unknown 50.3
2750 Male, age 76, both hemispheres 43.4
1828 Male, age 53, unknown 42.1
2047 Male, age 72, unknown 41.5
2016 Female, age 72, unknown 41.1
Inferior colliculus
nTPM: 40.9
2097 Female, age 72, unknown 41.9
1848 Female, age 42, unknown 41.1
2849 Male, age 72, unknown 41.0
1890 Male, age 53, unknown 39.9
Median raphe nucleus
nTPM: 40.8
2220 Male, age 76, midline 40.8
Pedunculopontine tegmental nucleus
nTPM: 44.8
2338 Male, age 61, both hemispheres 49.9
2334 Male, age 80, both hemispheres 42.3
1921 Female, age 85, both hemispheres 42.0
Periaquaductal grey, anterior
nTPM: 40.8
1795 Male, age 51, unknown 41.1
1947 Male, age 18, unknown 40.8
2502 Female, age 75, unknown 40.5
Periaquaductal grey, dorsal
nTPM: 40.9
2464 Female, age 72, unknown 41.8
1831 Male, age 72, unknown 41.6
1840 Male, age 53, unknown 40.5
2850 Male, age 76, both hemispheres 39.8
Periaquaductal grey, lateral
nTPM: 40.2
2053 Male, age 18, unknown 41.0
2272 Male, age 74, both hemispheres 40.1
2140 Male, age 76, both hemispheres 39.6
Pretectal area
nTPM: 41.6
1817 Female, age 42, unknown 43.5
2316 Male, age 76, right hemisphere 43.1
2273 Male, age 74, both hemispheres 42.9
1944 Female, age 72, unknown 42.1
1815 Male, age 53, unknown 41.9
1816 Male, age 51, unknown 41.6
2007 Male, age 72, unknown 41.1
2407 Male, age 75, both hemispheres 40.7
2825 Male, age 18, unknown 40.6
2667 Female, age 75, unknown 40.0
2224 Female, age 72, unknown 39.6
Red nucleus
nTPM: 42.3
2823 Male, age 76, right hemisphere 44.5
2503 Female, age 72, unknown 44.2
1821 Female, age 72, unknown 44.0
2588 Male, age 74, left hemisphere 43.9
2725 Female, age 75, unknown 43.1
1954 Female, age 42, unknown 41.6
1865 Male, age 51, unknown 41.4
1904 Male, age 53, unknown 41.4
2227 Male, age 72, unknown 41.4
2785 Male, age 18, unknown 41.2
2769 Male, age 72, unknown 41.1
2584 Male, age 75, left hemisphere 39.4
Substantia nigra
nTPM: 40.9
2241 Male, age 72, unknown 42.2
1851 Male, age 51, unknown 41.6
2409 Female, age 72, unknown 41.6
2665 Male, age 74, both hemispheres 41.5
2590 Female, age 75, unknown 41.1
2699 Male, age 18, unknown 40.9
1889 Female, age 72, unknown 40.7
1916 Female, age 42, unknown 40.1
1941 Male, age 53, unknown 40.1
2583 Male, age 75, right hemisphere 39.3
Superior colliculus
nTPM: 41.8
2587 Male, age 74, left hemisphere 45.3
1895 Male, age 76, right hemisphere 43.2
2668 Female, age 75, unknown 42.4
1796 Male, age 53, unknown 42.3
1839 Male, age 51, unknown 41.3
1995 Male, age 72, unknown 41.3
2261 Male, age 18, unknown 41.2
1913 Female, age 42, unknown 40.8
2087 Female, age 72, unknown 40.7
2664 Male, age 75, both hemispheres 39.3
Ventral tegmental area
nTPM: 42.7
2021 Male, age 53, unknown 46.2
2218 Male, age 76, both hemispheres 43.8
2410 Female, age 72, unknown 42.1
1915 Female, age 42, unknown 41.9
1942 Male, age 51, unknown 41.4
2223 Female, age 72, unknown 40.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.6
Samples: 139

Max nTPM: 461.6
Min nTPM: 1.0
Std nTPM: 91.2
Median nTPM: 31.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 461.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 438.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 406.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 341.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 327.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 301.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 273.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 250.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 250.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 235.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 213.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.1
FF:10158-103A5 76 years, female 54.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.6
Pig sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Female 0.4
Sample B Female 0.0
Sample C Male 0.4
Sample D Male 0.4
Periaqueductal gray
nTPM: 0.3
Samples: 3

Max nTPM: 0.7
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.2
Sample D Male 0.7
Substantia nigra
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.1
Sample A Female 0.6
Sample B Female 0.8
Sample C Male 0.4
Sample D Male 0.1
Superior colliculi
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.9
Sample B Female 0.4
Sample C Male 0.7
Sample D Male 0.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.5
Sample C Female 0.6
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73573151 Antisense, RP_051121_03_D05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.