BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.6 nTPM
HPA:45.6 nTPM
GTEx:59.3 nTPM
FANTOM5:45.5 Scaled Tags Per Million
Pig:0.5 nTPM
Mouse:0.5 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA024372Antibody CAB002791
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.7
1781 Male, age 74, unknown 58.7
2846 Female, age 79, unknown 45.9
1857 Female, age 85, left hemisphere 44.4
2481 Female, age 94, left hemisphere 43.6
1854 Male, age 80, left hemisphere 43.0
2290 Female, age 72, unknown 41.7
2289 Male, age 61, right hemisphere 40.7
2288 Male, age 75, left hemisphere 39.6
Claustrum
nTPM: 40.9
2196 Female, age 79, unknown 42.5
2392 Female, age 94, both hemispheres 42.0
2645 Female, age 72, unknown 41.3
2568 Male, age 61, both hemispheres 41.1
1956 Male, age 74, unknown 41.0
2198 Male, age 80, both hemispheres 40.5
2284 Female, age 91, both hemispheres 39.8
2292 Female, age 85, both hemispheres 39.8
2491 Male, age 75, both hemispheres 39.8
Globus pallidus, externus
nTPM: 41.8
2772 Female, age 79, unknown 45.7
1996 Male, age 80, right hemisphere 43.1
2395 Male, age 75, both hemispheres 41.0
2646 Male, age 61, right hemisphere 39.8
2567 Female, age 72, unknown 39.4
Globus pallidus, internus
nTPM: 40.6
2037 Male, age 80, right hemisphere 42.5
2778 Female, age 91, both hemispheres 41.2
1818 Male, age 74, unknown 40.7
2111 Female, age 85, right hemisphere 40.4
2287 Male, age 75, right hemisphere 40.0
2566 Female, age 72, unknown 39.9
2483 Female, age 94, right hemisphere 39.8
Nucleus accumbens
nTPM: 41.8
1856 Female, age 91, right hemisphere 43.8
1783 Male, age 74, unknown 43.5
2286 Male, age 75, left hemisphere 42.8
2391 Female, age 94, left hemisphere 42.5
1806 Female, age 85, left hemisphere 41.3
2698 Female, age 72, unknown 40.5
2732 Male, age 80, right hemisphere 40.2
2824 Male, age 61, right hemisphere 39.5
Nucleus basalis of Meynert
nTPM: 45.6
2484 Female, age 94, left hemisphere 50.7
2821 Male, age 75, both hemispheres 47.1
2393 Male, age 80, right hemisphere 44.5
2569 Male, age 61, both hemispheres 40.1
Nucleus of the diagonal band
nTPM: 39.8
1979 Male, age 74, unknown 40.2
2029 Male, age 61, right hemisphere 40.1
1812 Female, age 91, both hemispheres 39.9
2195 Female, age 85, both hemispheres 39.5
2775 Male, age 80, right hemisphere 39.2
Olfactory tubercle
nTPM: 40.2
2856 Male, age 75, right hemisphere 41.3
1998 Female, age 91, both hemispheres 40.7
1846 Male, age 80, right hemisphere 40.1
2487 Female, age 94, left hemisphere 38.6
Putamen
nTPM: 42.5
2466 Female, age 79, unknown 46.0
2482 Female, age 94, left hemisphere 45.7
1937 Female, age 91, right hemisphere 43.4
2489 Female, age 72, unknown 41.5
1838 Male, age 80, right hemisphere 40.9
1829 Male, age 74, unknown 40.2
2647 Male, age 75, left hemisphere 39.6
Septal nuclei
nTPM: 40.4
2394 Male, age 61, left hemisphere 41.9
2031 Female, age 72, unknown 41.1
2009 Female, age 91, both hemispheres 40.4
1960 Male, age 74, unknown 40.1
2059 Female, age 85, both hemispheres 40.0
2199 Male, age 80, right hemisphere 40.0
2629 Female, age 94, right hemisphere 39.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 59.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.9
Samples: 246

Max nTPM: 304.0
Min nTPM: 0.9
Std nTPM: 49.9
Median nTPM: 19.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 304.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 271.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 225.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 222.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 188.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 186.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 185.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 180.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 174.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 170.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 168.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.1
Samples: 246

Max nTPM: 1519.0
Min nTPM: 0.5
Std nTPM: 108.7
Median nTPM: 15.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 1519.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 333.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 299.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 276.0
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 259.8
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 234.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 230.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 224.2
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 200.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 198.3
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 156.7
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Brain - Putamen (basal ganglia)
Average nTPM: 59.3
Samples: 205

Max nTPM: 756.8
Min nTPM: 0.8
Std nTPM: 101.8
Median nTPM: 23.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 756.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 678.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 558.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 520.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 385.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 327.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 282.7
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 222.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 221.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 214.8
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 209.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.2
FF:10164-103B2 76 years, female 13.2
Globus pallidus
Scaled Tags Per Million: 45.5
FF:10175-103C4 60 years, female 63.1
FF:10161-103A8 76 years, female 28.0
Nucleus accumbens
Scaled Tags Per Million: 3.4
FF:10037-101F1 23-56 years, mixed 3.4
Putamen
Scaled Tags Per Million: 19.6
FF:10176-103C5 60 years, female 19.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.5
Pig sample Sample description nTPM
Caudate
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Female 0.6
Sample B Female 0.0
Sample C Male 0.4
Sample D Male 0.4
Putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.6
Sample D Male 0.6
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.7
Sample C Male 0.4
Sample D Male 0.4
Ventral pallidum
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.2
Sample A Female 0.5
Sample B Female 0.2
Sample C Male 0.5
Sample D Male 0.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Male 0.6
Sample B Male 0.7
Sample C Female 0.3
Sample D Female 0.5
Septum
nTPM: 0.4
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 1.4
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.0
Sample A Male 0.5
Sample B Male 0.0
Sample C Female 0.8
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
73573151 Antisense, RP_051121_03_D05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
73573151 Antisense, RP_051121_03_D05, Mouse strain C57BL/6J (56 days, male) 0.0

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