MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.2 nTPM
HPA:44.2 nTPM
GTEx:50.7 nTPM
FANTOM5:67.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.2
2019 Male, age 18, unknown 44.9
2411 Female, age 72, unknown 43.6
1827 Male, age 72, unknown 42.9
1870 Female, age 42, unknown 41.6
2219 Male, age 76, both hemispheres 41.3
1833 Male, age 53, unknown 41.0
1830 Male, age 51, unknown 40.1
2666 Male, age 74, left hemisphere 39.5
2828 Female, age 72, unknown 39.1
2586 Male, age 75, left hemisphere 38.0
Dorsal raphe nucleus
nTPM: 40.9
2298 Female, age 72, unknown 41.9
2750 Male, age 76, both hemispheres 41.7
1828 Male, age 53, unknown 41.3
2047 Male, age 72, unknown 40.3
2016 Female, age 72, unknown 39.1
Inferior colliculus
nTPM: 41.5
2097 Female, age 72, unknown 43.1
1890 Male, age 53, unknown 42.2
1848 Female, age 42, unknown 40.9
2849 Male, age 72, unknown 39.8
Median raphe nucleus
nTPM: 41.0
2220 Male, age 76, midline 41.0
Pedunculopontine tegmental nucleus
nTPM: 41.9
1921 Female, age 85, both hemispheres 43.7
2334 Male, age 80, both hemispheres 41.9
2338 Male, age 61, both hemispheres 40.1
Periaquaductal grey, anterior
nTPM: 42.3
1947 Male, age 18, unknown 43.5
2502 Female, age 75, unknown 42.3
1795 Male, age 51, unknown 41.1
Periaquaductal grey, dorsal
nTPM: 39.2
1831 Male, age 72, unknown 39.7
1840 Male, age 53, unknown 39.6
2850 Male, age 76, both hemispheres 38.8
2464 Female, age 72, unknown 38.7
Periaquaductal grey, lateral
nTPM: 38.9
2053 Male, age 18, unknown 39.9
2272 Male, age 74, both hemispheres 39.8
2140 Male, age 76, both hemispheres 37.2
Pretectal area
nTPM: 43.2
1816 Male, age 51, unknown 47.8
1817 Female, age 42, unknown 46.5
1944 Female, age 72, unknown 46.2
2007 Male, age 72, unknown 45.6
1815 Male, age 53, unknown 44.1
2667 Female, age 75, unknown 42.5
2224 Female, age 72, unknown 41.5
2273 Male, age 74, both hemispheres 40.9
2316 Male, age 76, right hemisphere 40.2
2407 Male, age 75, both hemispheres 40.2
2825 Male, age 18, unknown 40.0
Red nucleus
nTPM: 42.1
1821 Female, age 72, unknown 46.8
2725 Female, age 75, unknown 43.2
1904 Male, age 53, unknown 42.4
2584 Male, age 75, left hemisphere 42.1
2503 Female, age 72, unknown 41.8
2785 Male, age 18, unknown 41.6
1954 Female, age 42, unknown 41.5
2588 Male, age 74, left hemisphere 41.5
1865 Male, age 51, unknown 41.4
2823 Male, age 76, right hemisphere 41.4
2227 Male, age 72, unknown 40.7
2769 Male, age 72, unknown 40.3
Substantia nigra
nTPM: 44.2
2409 Female, age 72, unknown 47.7
1916 Female, age 42, unknown 47.0
2241 Male, age 72, unknown 46.6
1889 Female, age 72, unknown 45.3
1851 Male, age 51, unknown 45.1
1941 Male, age 53, unknown 44.7
2583 Male, age 75, right hemisphere 42.5
2590 Female, age 75, unknown 42.1
2665 Male, age 74, both hemispheres 40.7
2699 Male, age 18, unknown 40.6
Superior colliculus
nTPM: 41.0
1895 Male, age 76, right hemisphere 43.3
2668 Female, age 75, unknown 42.2
2261 Male, age 18, unknown 42.0
2587 Male, age 74, left hemisphere 41.9
2087 Female, age 72, unknown 41.6
1913 Female, age 42, unknown 41.0
1796 Male, age 53, unknown 40.9
1839 Male, age 51, unknown 40.0
1995 Male, age 72, unknown 39.6
2664 Male, age 75, both hemispheres 37.4
Ventral tegmental area
nTPM: 42.0
2410 Female, age 72, unknown 45.1
1915 Female, age 42, unknown 42.6
2218 Male, age 76, both hemispheres 42.6
2223 Female, age 72, unknown 42.3
1942 Male, age 51, unknown 40.9
2021 Male, age 53, unknown 38.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.7
Samples: 139

Max nTPM: 84.6
Min nTPM: 35.9
Std nTPM: 9.7
Median nTPM: 49.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 84.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 84.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 80.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 80.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 78.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 74.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 74.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 73.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 66.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 65.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 64.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.5
FF:10158-103A5 76 years, female 67.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.