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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:213.8 nTPM
HPA:213.8 nTPM
GTEx:245.4 nTPM
FANTOM5:242.3 Scaled Tags Per Million
Pig:163.4 nTPM
Mouse:443.1 nTPM
Allen mouse:24.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 213.8
Sample id Sample description nTPM
Amygdala
nTPM: 202.2
1987 Female, age 91, left hemisphere 212.4
2517 Female, age 94, left hemisphere 210.3
2814 Male, age 76, right hemisphere 202.9
2514 Male, age 75, right hemisphere 197.5
2695 Female, age 67, right hemisphere 187.7
Basal amygdala
nTPM: 210.9
2243 Female, age 91, right hemisphere 234.6
2110 Male, age 80, left hemisphere 230.9
2685 Female, age 94, left hemisphere 209.3
1955 Male, age 76, both hemispheres 202.8
2609 Male, age 75, right hemisphere 197.8
2827 Female, age 67, right hemisphere 190.1
Central amygdala
nTPM: 205.1
2239 Male, age 80, left hemisphere 221.4
2826 Female, age 94, left hemisphere 215.3
2515 Male, age 75, right hemisphere 200.5
1905 Male, age 76, both hemispheres 198.8
2701 Female, age 91, right hemisphere 189.5
Corticomedial amygdala
nTPM: 211.8
2829 Male, age 80, left hemisphere 237.4
2242 Female, age 91, right hemisphere 222.2
2429 Female, age 94, left hemisphere 212.6
2535 Female, age 67, right hemisphere 206.8
2428 Male, age 75, right hemisphere 197.4
2240 Male, age 76, both hemispheres 194.4
Lateral amygdala
nTPM: 204.1
2534 Female, age 94, left hemisphere 237.7
1883 Male, age 76, both hemispheres 210.2
2256 Male, age 80, left hemisphere 201.4
2516 Male, age 75, right hemisphere 196.3
2255 Female, age 91, right hemisphere 194.7
2830 Female, age 67, right hemisphere 184.6
Stria terminalis, bed nucleus
nTPM: 213.8
1974 Female, age 91, both hemispheres 229.5
2486 Female, age 94, both hemispheres 216.7
2201 Male, age 74, unknown 195.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 245.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 245.4
Samples: 152

Max nTPM: 450.4
Min nTPM: 152.2
Std nTPM: 52.4
Median nTPM: 236.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 450.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 400.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 398.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 382.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 367.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 358.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 344.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 334.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 323.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 321.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 320.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 320.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 315.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 314.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 310.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 309.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 308.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 302.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 302.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 301.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 301.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 301.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 301.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 300.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 300.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 299.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 297.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 294.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 290.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 290.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 290.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 286.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 285.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 282.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 281.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 280.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 279.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 276.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 275.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 275.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 273.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 272.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 270.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 268.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 267.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 266.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 266.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 264.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 264.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 263.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 263.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 263.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 262.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 262.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 261.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 261.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 260.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 259.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 254.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 253.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 253.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 252.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 252.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 251.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 251.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 248.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 246.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 244.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 243.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 242.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 242.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 241.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 238.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 238.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 238.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 236.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 236.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 235.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 233.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 232.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 231.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 231.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 229.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 228.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 227.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 227.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 227.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 225.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 224.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 224.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 224.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 223.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 223.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 222.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 222.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 220.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 220.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 219.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 218.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 216.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 215.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 215.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 215.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 215.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 213.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 212.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 212.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 212.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 212.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 211.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 209.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 209.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 209.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 208.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 208.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 207.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 207.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 206.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 205.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 202.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 201.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 200.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 200.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 199.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 199.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 199.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 194.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 194.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 194.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 192.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 192.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 191.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 191.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 191.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 189.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 184.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 184.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 182.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 182.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 180.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 180.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 180.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 179.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 177.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 172.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 172.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 170.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 169.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 168.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 159.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 154.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 152.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 242.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 242.3
FF:10151-102I7 76 years, female 242.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 163.4
Pig sample Sample description nTPM
Amygdala
nTPM: 163.4
Samples: 4

Max nTPM: 217.9
Min nTPM: 141.1
Sample A Female 217.9
Sample B Female 146.3
Sample C Male 148.3
Sample D Male 141.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 443.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 443.1
Samples: 4

Max nTPM: 470.3
Min nTPM: 417.0
Sample A Male 470.3
Sample B Male 454.4
Sample C Female 417.0
Sample D Female 430.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.9
199390 Antisense, RP_040507_02_D11, Mouse strain C57BL/6J (56 days, male) 28.0
77620391 Antisense, RP_070205_01_E12, Mouse strain C57BL/6J (56 days, male) 21.9
77414125 Antisense, RP_070205_01_E12, Mouse strain C57BL/6J (56 days, male) 20.1

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