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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:242.7 nTPM
HPA:242.7 nTPM
GTEx:276.0 nTPM
FANTOM5:272.4 Scaled Tags Per Million
Pig:239.7 nTPM
Mouse:530.1 nTPM
Allen mouse:23.6 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB007742
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 242.7
Sample id Sample description nTPM
Hippocampus
nTPM: 221.0
1898 Male, age 80, left hemisphere 244.4
1855 Male, age 76, left hemisphere 233.1
2621 Female, age 67, right hemisphere 227.3
2148 Female, age 91, left hemisphere 215.3
1911 Female, age 85, right hemisphere 204.5
2529 Female, age 94, left hemisphere 201.4
Dentate gyrus
nTPM: 224.7
2530 Female, age 94, left hemisphere 244.7
2010 Male, age 76, both hemispheres 233.0
1927 Female, age 91, both hemispheres 230.7
2531 Female, age 67, both hemispheres 221.2
2246 Female, age 85, both hemispheres 215.1
2528 Male, age 74, both hemispheres 203.4
Entorhinal gyrus
nTPM: 218.2
2613 Female, age 94, left hemisphere 234.2
2764 Male, age 80, right hemisphere 229.9
1938 Female, age 85, left hemisphere 227.0
1787 Male, age 76, left hemisphere 223.4
2117 Female, age 91, right hemisphere 202.3
2686 Male, age 75, right hemisphere 192.6
Hippocampus, CA1
nTPM: 242.7
2749 Male, age 80, left hemisphere 316.9
2045 Male, age 76, both hemispheres 234.0
1873 Female, age 85, both hemispheres 227.8
2527 Male, age 74, both hemispheres 222.0
2082 Female, age 91, right hemisphere 212.6
Hippocampus, CA2
nTPM: 221.8
1963 Male, age 80, left hemisphere 242.9
1892 Male, age 76, both hemispheres 239.1
2437 Female, age 94, left hemisphere 223.0
1940 Female, age 85, left hemisphere 210.5
2249 Male, age 74, both hemispheres 209.8
2113 Female, age 91, right hemisphere 205.3
Hippocampus, CA3
nTPM: 231.1
2137 Male, age 80, left hemisphere 283.8
2861 Female, age 67, both hemispheres 230.2
1867 Male, age 76, both hemispheres 227.6
2620 Female, age 94, left hemisphere 226.8
2436 Male, age 74, both hemispheres 218.0
1891 Female, age 85, both hemispheres 200.6
Parahippocampal cortex
nTPM: 213.2
2245 Female, age 91, both hemispheres 225.8
1850 Male, age 80, both hemispheres 222.3
1933 Female, age 85, both hemispheres 221.6
2532 Female, age 72, left hemisphere 219.5
2250 Female, age 67, right hemisphere 215.6
1990 Female, age 91, right hemisphere 212.3
2018 Male, age 76, both hemispheres 209.3
2693 Female, age 94, both hemispheres 206.3
2622 Female, age 67, right hemisphere 203.3
2692 Male, age 74, both hemispheres 195.7
Perirhinal gyrus
nTPM: 236.5
1847 Female, age 91, left hemisphere 254.6
1794 Male, age 80, right hemisphere 242.9
2521 Female, age 94, right hemisphere 241.9
1841 Female, age 85, right hemisphere 230.2
2848 Male, age 76, right hemisphere 212.9
Subiculum
nTPM: 207.9
1977 Female, age 85, both hemispheres 229.5
1901 Male, age 80, both hemispheres 228.3
2042 Male, age 76, both hemispheres 204.3
2438 Female, age 94, left hemisphere 197.3
2619 Male, age 74, both hemispheres 196.3
2729 Female, age 91, right hemisphere 191.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 276.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 276.0
Samples: 197

Max nTPM: 612.2
Min nTPM: 128.3
Std nTPM: 88.4
Median nTPM: 264.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 612.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 538.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 506.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 476.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 476.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 471.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 466.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 454.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 443.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 439.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 432.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 431.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 427.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 426.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 424.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 424.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 419.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 408.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 405.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 405.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 401.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 401.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 396.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 379.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 378.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 376.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 375.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 375.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 364.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 363.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 362.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 361.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 358.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 354.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 353.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 350.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 348.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 348.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 346.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 345.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 340.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 340.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 336.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 334.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 333.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 333.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 333.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 330.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 328.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 325.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 320.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 320.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 319.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 318.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 317.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 316.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 315.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 314.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 313.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 313.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 311.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 311.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 310.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 308.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 307.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 307.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 305.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 305.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 304.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 303.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 302.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 300.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 300.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 299.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 297.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 297.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 297.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 296.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 293.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 293.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 290.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 289.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 287.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 286.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 285.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 284.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 283.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 279.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 278.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 277.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 276.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 274.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 273.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 272.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 269.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 267.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 266.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 265.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 264.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 261.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 261.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 259.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 257.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 255.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 254.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 253.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 252.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 251.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 251.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 251.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 250.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 249.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 246.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 244.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 243.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 243.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 242.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 241.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 240.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 239.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 239.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 239.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 237.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 234.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 234.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 229.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 228.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 228.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 228.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 226.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 226.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 225.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 225.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 223.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 223.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 223.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 222.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 222.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 222.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 217.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 217.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 217.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 217.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 216.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 214.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 214.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 212.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 211.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 210.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 208.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 208.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 206.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 205.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 205.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 204.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 201.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 199.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 198.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 197.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 195.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 193.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 191.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 191.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 191.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 189.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 188.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 184.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 183.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 179.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 178.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 176.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 175.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 175.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 173.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 172.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 172.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 172.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 172.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 168.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 162.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 161.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 156.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 156.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 155.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 153.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 153.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 153.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 152.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 148.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 148.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 147.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 147.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 146.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 145.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 144.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 144.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 128.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 272.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 272.4
FF:10169-103B7 60 years, female 346.3
FF:10153-102I9 76 years, female 198.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 239.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 239.7
Samples: 4

Max nTPM: 313.3
Min nTPM: 176.8
Sample A Female 313.3
Sample B Female 241.4
Sample C Male 227.2
Sample D Male 176.8
Entorhinal cortex
nTPM: 198.2
Samples: 4

Max nTPM: 216.8
Min nTPM: 161.5
Sample A Female 208.0
Sample B Female 216.8
Sample C Male 206.4
Sample D Male 161.5
Subiculum
nTPM: 193.6
Samples: 4

Max nTPM: 240.2
Min nTPM: 170.6
Sample A Female 240.2
Sample B Female 183.5
Sample C Male 180.2
Sample D Male 170.6
Ventral hippocampus
nTPM: 213.1
Samples: 4

Max nTPM: 240.3
Min nTPM: 155.2
Sample A Female 220.7
Sample B Female 155.2
Sample C Male 236.2
Sample D Male 240.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 530.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 429.8
Samples: 4

Max nTPM: 454.4
Min nTPM: 400.8
Sample A Male 400.8
Sample B Male 420.1
Sample C Female 443.8
Sample D Female 454.4
Hippocampal formation
nTPM: 530.2
Samples: 4

Max nTPM: 569.6
Min nTPM: 486.7
Sample A Male 536.3
Sample B Male 528.1
Sample C Female 569.6
Sample D Female 486.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.6
199390 Antisense, RP_040507_02_D11, Mouse strain C57BL/6J (56 days, male) 27.8
77620391 Antisense, RP_070205_01_E12, Mouse strain C57BL/6J (56 days, male) 19.3
77414125 Antisense, RP_070205_01_E12, Mouse strain C57BL/6J (56 days, male) 19.1

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